Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11670 ATGACAGAAACTACCTCTTCCAGCAGCAGCAGCAGCAGCTCCTCCACATCACCACCACCTTCACCCTCAACTACTTTATCATCATCACATTCCCTCCCCAACTCACCCAAACCCCGAAAAACAGAGACCCAACAGAAACAGAGCAGGCCCAAAAGACCCAGAGACTGCAGCAAGCACCCCGTTTACCACGGCGTACGAAAGCGCAATTGGGGCAAATGGGTGTCCGAAATTCGCGAGCCGCGCAAGAAATCACGCATCTGGCTCGGTACCTTCGAAACCCCTGAAATGGCAGCACGAGCCCATGATGTTGCGGCTCTGAGCATTAAGGGACAATCAGCGATTCTGAACTTCCCAGACATAGCTGAGATGCTTCCAAGACCCGCCACGTCATCCCCACGTGACATCCAAGCCGCAGCTACAGCAGCAGCAGCGATGGTTAACTTGGACCCTGTTTCAGTGTCTTCTTCTTCTTCTTCAGAAGGAACAGAGTCATCAGAATTGAGCGAGATAGTTGAGCTTCCGAAGATTGAAGACTCGGTGGAATCTTCTAGAGAAGAGTTTGTGTTGCTTGACTTGGTGGATAGTTGGGTGTATCCGCCAATGGGGTTAGAGGGAATCGAGTTCTTTGCCACTTTTTCTGAGGAGATATTTGCACAACAGAGTTTTATTGCAGATAACTACTCTGTCTCTGAGTCTGAGATATCCATTTGGGATTGA 717 0.4979 MTETTSSSSSSSSSSTSPPPSPSTTLSSSHSLPNSPKPRKTETQQKQSRPKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFETPEMAARAHDVAALSIKGQSAILNFPDIAEMLPRPATSSPRDIQAAATAAAAMVNLDPVSVSSSSSSEGTESSELSEIVELPKIEDSVESSREEFVLLDLVDSWVYPPMGLEGIEFFATFSEEIFAQQSFIADNYSVSESEISIWD. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11670 238 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Seca3g11670 238 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Seca3g11670 238 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Seca3g11670 238 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Seca3g11670 238 MobiDBLite consensus disorder prediction 1 63 - -
Seca3g11670 238 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Seca3g11670 238 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Seca3g11670 238 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Seca3g11670 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 180 - -
Seca3g11670 238 CDD AP2 62 119 IPR001471 GO:0003700|GO:0006355
Seca3g11670 238 MobiDBLite consensus disorder prediction 1 41 - -
Seca3g11670 238 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Seca3g11670 238 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11670 Seca-Chr3 265215757 265216473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11670 40 200 AP2-EREBP Transcription Factor Family AT5G11590 56.757 4.45e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g11670 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11670 K09286 - gmx:100804056 278.87