Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11666 ATGGAAGCGCCGGAATACTTCATCGGTGGCTTTTACGGCGCCGGAGGAGCCGACCAATTCTCGCAGGCAGAGAAGCGCCACAGCGACCAGAAACCCGGCGAGCCTTTCGCCATTGATGACCTTCTCGACTTCTCCAATGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTCGCCGGGAACTCTGCTGACTCCTCCACCGTCACTGCCGTCGACAGTTGCAACTCCTCAATTTCTGGCGGTGATAACCACTTCGCCGCCGCCATTGTCCCTCGCGGCTTCGCCTGCGATCCTCAACTCACCGGAGAACTCTGTGTTCCGCAGTACGATGACATGGCGGAACTGGAATGGCTCTCGAACTTCGTGGAAGACTCGTTCTCCGCCGAAGAGGAGTTGAAAACGCTGCAACTTCTCTCCGGCGCTGCTGCTTCCTCAACCGTTGGTGCTAAGCCTCAGACACCGGAGTCGTCCTCTTCCACCGACACTCTCCCGCCGTTCGCCACCGACGACAGCACTCGAAACGCTCCATTTCTCCATTCGGAAACCCCGCTCCCGGGGAAGGCACGCAGCAAGCGTTCACGCGCGGCGCCGGGGGACTGGTCCACGCGCCTCCTTCACCTTGCTGTGCCAGCTGACGCGCCGCCGCAGCAGAAGGTGGCACCGGCGAAGAAGCGGGAAGGTTCAAACGCGGAGTGCTCAGGGAGGAAATGCCTTCACTGCGGCGCGGAGAAAACGCCGCAATGGCGGACGGGGCCAATGGGACCGAAGACGCTGTGCAATGCGTGCGGTGTGAGGTTCAAGTCCGGTAGGTTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGTCGACGAAGCACTCGAATTCGCACAGGAAAGTTTTGGAGTTGAGGAGGCAAAAGGATCTGCAACGACAGCAGCATCAGCAACTGATGAGTCAGACTTCGATTTTCGGCGTATCCAACGGTGGAGATGACTTCATGATTCATCATCATCATCACCATTGTGGGCCAGACTTTAGGCATGTTATCTAG 1041 0.5898 MEAPEYFIGGFYGAGGADQFSQAEKRHSDQKPGEPFAIDDLLDFSNADAIMSDGFFDNVAGNSADSSTVTAVDSCNSSISGGDNHFAAAIVPRGFACDPQLTGELCVPQYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAASSTVGAKPQTPESSSSTDTLPPFATDDSTRNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLAVPADAPPQQKVAPAKKREGSNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKDLQRQQHQQLMSQTSIFGVSNGGDDFMIHHHHHHCGPDFRHVI. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11666 346 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Seca3g11666 346 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Seca3g11666 346 PANTHER GATA TRANSCRIPTION FACTOR 24 311 - -
Seca3g11666 346 FunFam GATA transcription factor 227 313 - -
Seca3g11666 346 PIRSF Txn_fac_GATA_plant 19 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca3g11666 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 295 - -
Seca3g11666 346 Coils Coil 296 316 - -
Seca3g11666 346 MobiDBLite consensus disorder prediction 146 198 - -
Seca3g11666 346 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Seca3g11666 346 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Seca3g11666 346 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Seca3g11666 346 Gene3D - 229 313 IPR013088 GO:0006355|GO:0008270
Seca3g11666 346 MobiDBLite consensus disorder prediction 146 179 - -
Seca3g11666 346 MobiDBLite consensus disorder prediction 212 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11666 Seca-Chr3 265174700 265175876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11666 34 346 C2C2-Gata Transcription Factor Family AT4G32890 45.846 2.17e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g11666 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11666 - - gmx:100776605 574.704