Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11665 ATGTCCTGCAAGGATGGTAGCAAAATCGCACTGGATAACGGAAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTCGAGAGGCTTTATCATGACTGCCCTAAACCCAGTTCCATTCGCCGCCAGCAGCTCATACGCGAGTGCCCAATTCTCTCCCACATTGAGCCCAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGGGAGAAGCAGAGAAAAGAAGCTTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGCTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAAAATAGCTATTTTCGTCAGAACACCCAAAATACTGTGCAGGCAACCAAAGACACAAGCTGTGAATCAGCGGTGACAAGTGGTCAGCACAGTTTGACAACTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCGAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCTAGAGCCTGTGGTCTTGTGGGACTAGAACCCACTAGGGTTGCTGAAATCCTCAAAGATCGGCCTTTATGGTTTCGTGATTGCCGAGCTGTTGATGTTCTCAATGTGCTACCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAGGATGGAAGCCTAGTGATCTGTGAGAGGTCCCTTAAAAATACTCAAAATGGCCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTTCCTAGTGGGTACCTCATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTGCCAGAAGTGCTGCGTCCTCTGTATGAATCGTCAACAGTGCTGGCTCAGAAGACAACTATGGCGGCTCTACGTCAGCTAAGGCAGATTTCGCATGAGGTTTCTCAGACTAATAACGTCACCGGATGGGGTAGACGACCCGCAGCTCTACGAGCACTTACTCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAATGATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGGTAATGGATTTCCTTCTGTCAGTAATGCAGTGTTATGTGCCAAAGCATCAATGCTACTACAGAATGTGCCCCCAGCCATTCTCCTAAGGTTCTTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACACGGCTGCTGCCATTAAAGTTGGCCCTTGTAGCTTATCAGGATCTCGCATTGGAAATTATGGGGGTCAAGTTATACTCCCTCTAGCACACACTATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGAAGACACATTAATGCCCAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATTTGCCCCAATTGATGCTTCCTTTACTGATGATGCCCCACTTCTACCTTCTGGATTTCGCATAATTCCTCTTGAATCCGGAAAGGAAGCTTCCAGCCCCAATCGCACTCTTGACCTTGCATCTGCCCTTGACATTGGTCCACCTGGAAACCGAGCTACAAATGATTATGCTGGAAATTCTGGCTGCATGAGATCCGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCATCTATGGCACGTCAATATGTTCGCAGCATTATATCATCTGTTCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACACACTGGGCTTAGGACGCCATTAGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGCGGAGCTACTTAAATCTAATAATGAGGGGAACGAATCTTTACTCAAGTCCTTGTGGCATCACTCAGATGCTATATTATGTTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCCTAGTTGCATTACAAGATATAACTTTGGAGAAAATATTTGATGATCACGGACGAAAAAATCTCTATTCAGAGTTTCCCCAGATTATTCAACAGGTCTATTAG 2376 0.4588 MSCKDGSKIALDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSYFRQNTQNTVQATKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQISHEVSQTNNVTGWGRRPAALRALTQRLSRGFNEALNGFTDEGWTMIGNDGVDDVTILVNSSPDKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRIGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDTLMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFTDDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPPGNRATNDYAGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHTGLRTPLGTPEAQTLAHWICNSYRCYLGAELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKNLYSEFPQIIQQVY. 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11665 791 FunFam Homeobox-leucine zipper protein REVOLUTA 15 70 - -
Seca3g11665 791 CDD homeodomain 15 75 IPR001356 GO:0003677
Seca3g11665 791 Pfam START domain 159 367 IPR002913 GO:0008289
Seca3g11665 791 CDD bZIP 67 106 - -
Seca3g11665 791 SMART START_1 158 368 IPR002913 GO:0008289
Seca3g11665 791 CDD START_ArGLABRA2_like 153 368 - -
Seca3g11665 791 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Seca3g11665 791 Gene3D - 193 376 IPR023393 -
Seca3g11665 791 SUPERFAMILY Bet v1-like 158 367 - -
Seca3g11665 791 ProSiteProfiles START domain profile. 149 364 IPR002913 GO:0008289
Seca3g11665 791 Coils Coil 70 111 - -
Seca3g11665 791 FunFam homeobox-leucine zipper protein ATHB-15 194 375 - -
Seca3g11665 791 Pfam MEKHLA domain 694 789 IPR013978 -
Seca3g11665 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 11 791 IPR044830 GO:0003700
Seca3g11665 791 MobiDBLite consensus disorder prediction 132 153 - -
Seca3g11665 791 MobiDBLite consensus disorder prediction 132 148 - -
Seca3g11665 791 Gene3D - 8 81 - -
Seca3g11665 791 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Seca3g11665 791 SMART HOX_1 12 78 IPR001356 GO:0003677
Seca3g11665 791 Pfam Homeodomain 15 73 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11665 Seca-Chr3 265144732 265154146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11665 1 790 Homeobox Transcription Factor Family AT1G52150 85.461 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g11665 START 1.3e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11665 K09338 - gmx:100800165 1498.41