Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11662 ATGAAATTTGAGCATAAAAGTAGTAAAGGATGTAACTATGGACCACCCTATGAATGGCAAGTGTACAACACTCTTGGTGGAAGTCATGGTGTACCCCAAGTACATTACAAGGGCAAGCAAGGTGACTATTTTATCATGATTATGGATATGCTGGGACCTAGCTTGTGGGATGTTTGGAACAACAACTCTCACACCATGTCCACTGAAATGGTTGCTTGTATTGCCATCGAAGCAATATCCATATTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTGTGCTTGGTGCTCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACAAAATGGCGGGATAGTACAACAGGTTTGCATGTGGAATATGATCAAAGGCCAGATGTTTTTAGGGGCACAGTCCGCTATGCTAGTGTACATGCACACTTGGGGAGAACTAGTAGTAGGAGGGATGATTTGGAATCTCTTGCATATACTCTGATTTTTCTTCTTCGAGGTCGACTTCCTTGGCAGGGATTCCAGTTTTCTCAGGGTGATAACAAAGGATTTCTGGTTTGCAAGAAGAAGATGGGAACAAGTCCAGATGTCCTATGCAGCTTTTGTCCCCAACCTTTTAAATTGTTTGTTGAGCATGTAGTGAACTTAAAGTTTGATGAAGAGCCTAACTATCCAAAATACATTTCTCTATTTGACGGGATTGTGGGTCCAAACCCAGATATTAGGCCAATTAATACAGAAGGTGCACAAAAGTGTCTGAAGCTCATTGGTCATAAGAGAGGCCGTTTGGCAATGGAAGAGGAAGATGATGAACAACCCAAAAAGAAGTTTCGTATGGGTTTGCCAGCATCCCAGTGGATAAGTGTTTATAATGCTCGTAAACCGCTGAAACAAAGGTATCACTACAATGTATCAGAGACAAGGCTATCCCAGCACATTGAGAAAGGAAACGAGGATGGCTTATTTATTAGCAGTGTTGCTTCGTGTATGAACCTATGGGCCTTAATCATGGATGCAGGGACAGGTTTTACTTCCCAAGTTTATGAACTCTCCCCCCATTTTCTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTACTACATCAGCGCAATTGCTGGAGCTGTAAATGGGAGCTCATTAGTAGTAATGTCTAAGGGCACACAATATTTGCAGCAATCGTACAAAGTTAGTGACTCGTTTCCTTTCAAGTGGATTAACAAAAAGTGGAGGGAGGGCTTTTTTGTGACTGCAATGGCCACCTCGGGGCCCAGATGGGGAGTAGTTATGTCCCGTGGTGCAGGATTTTCTGACCAGGTGGTTGAACTAGATTTTCTGTATCCTAGTGAAGGGGTTCATAAGCGGTGGGATTGTGGATACCGAATCACAGCGGCTGCTGCAAATTGGGACCAAGCTGCTCTTGTCCTGAGTGTGCCAAGGAGGAAGCCCCTGGATGAAACTCAGGAAACACTTAGGACTACTGCTTTTCCTAGTACACATGTCAAGGAGAAATGGGCGAAGAACCTCTACATTGCTTCTATTTGCTACGGACGTACAGTTTCTTGA 1602 0.4363 MKFEHKSSKGCNYGPPYEWQVYNTLGGSHGVPQVHYKGKQGDYFIMIMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFVLGAPGTPDEKKLFLVDLGLATKWRDSTTGLHVEYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGFQFSQGDNKGFLVCKKKMGTSPDVLCSFCPQPFKLFVEHVVNLKFDEEPNYPKYISLFDGIVGPNPDIRPINTEGAQKCLKLIGHKRGRLAMEEEDDEQPKKKFRMGLPASQWISVYNARKPLKQRYHYNVSETRLSQHIEKGNEDGLFISSVASCMNLWALIMDAGTGFTSQVYELSPHFLHKEWIMEQWEKNYYISAIAGAVNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFFVTAMATSGPRWGVVMSRGAGFSDQVVELDFLYPSEGVHKRWDCGYRITAAAANWDQAALVLSVPRRKPLDETQETLRTTAFPSTHVKEKWAKNLYIASICYGRTVS. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11662 533 SMART serkin_6 19 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11662 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Seca3g11662 533 CDD STKc_CK1 1 242 - -
Seca3g11662 533 Gene3D Transferase(Phosphotransferase) domain 1 1 287 - -
Seca3g11662 533 ProSiteProfiles Protein kinase domain profile. 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11662 533 SUPERFAMILY Protein kinase-like (PK-like) 13 246 IPR011009 -
Seca3g11662 533 PANTHER CASEIN KINASE-RELATED 1 493 - -
Seca3g11662 533 Pfam Protein kinase domain 31 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11662 Seca-Chr3 265100192 265106331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11662 35 215 MAP Kinase Kinase Kinase AT1G05100 25.275 5.14e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca3g11662 Pkinase 1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11662 - - gmx:100799630 1019.99