Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11653 ATGACTCGGCGGTGCTCTCTGTGTAGCAACAATGGGCACAACTCGAGAACATGTCCAACTCGTAGCGTGAAGCTTTTCGGTGTGAGAATGAGTCTCACCGATGGATCCTTCATCAAGAAGAGCGCCAGCATGAGCAACCTCTCCTCTTCCTCCGCCACCGCCACCGCCGCTTCCCCTTCCTCCGACGGCTACTCCTCCGATCACCCTTCCCTCCCCTCCTCTTCCCGTCAGAAAAAGAAAGGCGTTCCATGGACTGAAGAGGAACATCGCATGTTCTTAATTGGTCTTCAAAAGCTGGGAAAAGGAGACTGGCGTGGAATAGCAAGTAATTTTGTTGTGTCAAGGAGCCCCACTCAAGTAGCAAGTCATGCCCAGAAATACTTTATACGACAGAGTAATGCCACCAGGAGAAAGAGACGTTCAAGTCTTTTTGACTTGCCTCCGGATATGGTTGTTTCAAATCCCCCTTCCATGCCAGAAGTACTACTGCCACCTTCTGAGAACTCTCAGCCTACTAATGCAGAATCACAGCCTTCATTAAATCTCTCCCTCAAGTCAGAATTTGAACCCATGGAAACTACTCAAGAAAATGTGGAAGATCCCAATGAAACTATGATGGCATCCAATGGAATGACACCAGTGCCTCCTGGATTCTTCCCAACATACTCACCTCTCCCATTTTCCATATGGCCATCAAATGCAGCTTCCTGTGAAGAAGTTAACGGAGCTGAAACATCTTATCATCAGGTCCTCAAACCAATCCCAGTCATTCCCAAGGAACCTGTCAATGTTGATGAACTTGTGGGAATTTCTCAGCTGAGTATTGGTGAAACTGGCGAAACACGGGTGCGTGATAAGGAGCCTTCCCCACTCTCTTTAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCTTTTCATGCAAAAACCCCAGTTGGAGATTCTGATTTAAACAATGGCAAGAACAATGTGATTCAAGCGGGTTGA 984 0.4756 MTRRCSLCSNNGHNSRTCPTRSVKLFGVRMSLTDGSFIKKSASMSNLSSSSATATAASPSSDGYSSDHPSLPSSSRQKKKGVPWTEEEHRMFLIGLQKLGKGDWRGIASNFVVSRSPTQVASHAQKYFIRQSNATRRKRRSSLFDLPPDMVVSNPPSMPEVLLPPSENSQPTNAESQPSLNLSLKSEFEPMETTQENVEDPNETMMASNGMTPVPPGFFPTYSPLPFSIWPSNAASCEEVNGAETSYHQVLKPIPVIPKEPVNVDELVGISQLSIGETGETRVRDKEPSPLSLKLLGEPSRQSAFHAKTPVGDSDLNNGKNNVIQAG. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11653 327 SUPERFAMILY Homeodomain-like 77 133 IPR009057 -
Seca3g11653 327 SMART sant 80 130 IPR001005 -
Seca3g11653 327 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
Seca3g11653 327 FunFam transcription factor MYB1R1 82 133 - -
Seca3g11653 327 PANTHER TRANSCRIPTION FACTOR KUA1 3 227 - -
Seca3g11653 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Seca3g11653 327 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Seca3g11653 327 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 131 IPR006447 GO:0003677
Seca3g11653 327 CDD SANT 83 128 IPR001005 -
Seca3g11653 327 MobiDBLite consensus disorder prediction 145 179 - -
Seca3g11653 327 Gene3D - 84 133 - -
Seca3g11653 327 MobiDBLite consensus disorder prediction 52 79 - -
Seca3g11653 327 ProSiteProfiles SANT domain profile. 84 132 IPR017884 -
Seca3g11653 327 MobiDBLite consensus disorder prediction 279 327 - -
Seca3g11653 327 MobiDBLite consensus disorder prediction 52 83 - -
Seca3g11653 327 MobiDBLite consensus disorder prediction 163 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11653 Seca-Chr3 265005093 265007529 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g11653 Myb_DNA-binding 5.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11653 - - gmx:778036 434.876