Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11650 ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAGGGACATTGCTGAAAAGAAGATGGAAAGCAGGGATTTCATGGGGGCTCGTAAATTTGCTCTTAAAGCTCAGCAGCTGTATCCTGATCTGGAAAATATAGCTCAAATGCTTGTTGTTTGTGATGCGCATTGCTCTGCTGAGATGAAATTGTTCGGCAATGAGATGGACTGGTATGGAATTCTTCAACTGGAACAGACGGCTAGTGATGCAATGATTAAAAAGCAATACAGGAAGTTCGCACTCCAACTTCATCCCGACAAAAACAAGTTTGCTGGTGCAGAAGCCGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTGCTTTTAGACATAGAAAAACGATCTCAGTTTGACATGAAGCGCAGGGTTCCAATGAACAAAACTGCTATGTCACGTCGTAATCAGCAAAAGGCTCCTATGAATTCCAGTTCTGCAATGAAAACCAACGTCAGGCCCAATTTTGCAAACTCGAATACTCAGCAGCAGCAGCAGCAATATAAGCAGCCAGTGCAGCAGCAGCAAAATGGTGGCCGCCCTACTTTTTGGACTGTCTGCCCATTTTGTTCTGTTAAGTATCAGTATTACAGAGAAGTTTTAAATAAACCTCTTCGCTGTCAACATTGCAATAGGCCCTTCATTGCATATAATGTGGATAGGAAAAGTACATCATCAGCAACTAATTCAAGTCAGCAAGCTTTTGGCCAGCAAAAAGATGGTCTGAATCATGGTCCTTCCAAGATGGGTGGATCTCAAGGCAACTTGCATGCTGAGAAGTCCAATACTGGGCTTCACGAGAAGAAAGGCCCTGTTGATGTCTCTGGAAAGCCACATGGAAAGAGGAAGAGGAATAAGGAGGCAGAATCTAGTCAAAGTTCTGATTTTACGAGCAGCACTGATTCAGAAGGTGGTAGGGTTGTTGGTGAGGATGGTGTTCCTGGTGTAGAAAATCATTCAACTTACAGAGAAGAGCAACCACGCAGATCTGCACGACAAAAGCATAAGGTTTCGTACAAGGATAATGTGAGTGACAATGATGATGACCTCTTAAGACCTTCAAAAAGGGGTAAGGAGTGTGGATCGCCATGTGGTGATGGTGAAAGTCATGGTGAGAGAATTAGAAAGAATGATCAGAATGGTTTAGCTGCTGAAGAGAGCTTACGAGATAGAAATGAGGAAACTAAAGTGGCGAGGGGAAAAGCAGTGGGAGGGTCAAAGCAGATGGATGAAACATCAGAGCATTCTTTTTCGGATTTAGCCTCCAAAGCAACAAATCATCCAAATGCTTATGTCTACTTTGAAGCAGAGTTCAGTGACTTTGACAAGGACAAGAAAAAAGAATGTTTTGTGGCAGGGCAGATTTGGGCTGTTTATGATACAACACATGGCATGCCTAGATTTTATGCTTTAATCAGGAAAGTTCTATCTCCTAGATTCAAGCTGCAGATAACATGGTTGGAATCACATCCAGGTAACAATGATGAAATGAAGTGGGTAAATGAGGATATGCCTGTTGCATGTGGGAAATATAAACTTGGTGACACTAACATCATGGAAGATCATCTGATATTCTCTCATGTGGTTACGTGTGAAAAGATTGGCCGCAATACTTTCAAAGTGTATCCTAGAAAGGGAGAAACTTGGGCTCTTTTTAAAAATTGGGATATCAAATGGTACATGGATGCAGCATCTCATAAGCAGTATGAATATGAGTTTGTTGAAATCTTGTCAGATTATGTTGAAGGTGAGGGTGTATATGTTGCACACTTAGCTAAGTTGAAAGGTTTTGTAGGCCTCTTTTTTCGAATTAGGAAAGAAGATAACCAGTCATTTCAAATTCCACCCCAGGAATTATTCAGATTCTCTCACAGGGTTCCCTCTTTCAAAATGACTGGTCAGGAAGGAGTAGATGTTCCTGTAGGATCTTATGAACTTGATCCTGCAGCTTTGCCGATGAATCTTGAAGAGACTGCTGTTCCTGAAAATTTGGATTTGAAGTTTGGTCACAGTTCTGGCACTGAGAATACAAGATCTTCAGAAAGATCAGAACCCCCAATGACATCTGACAGAGAGGTACCTACTCCCAAGGTTAATTTGCAAAGAAGCAATTTGGCTGAGAATAAGGATTCTGTTGATGATATTGATGATTGTCATGCTTCTCCAGCTTCGACCCTAGAAGCTATTGTAGTTCCAGATACCCAATTCTTCAATTTTGATGCTGAGAGGTCCCTTGAAAAGTTTCAAATTGGTCAGATTTGGGCATTTTACAGTGATGAGGATGGATTGCCAAAATACTATGGTCAGATTGATGGGATTGAGACTAGCCCACATCTTGAATTGCATGTTTCTTGGCTTGCTTGCTGCTGGCTACCAGAGAATACCACTAGATGGGAAGACAAAGATATGGTTATATCCTGTGGCAGATTTGAAGTTAATAAAAGAATTGACTTTCTCAGTGTTTATAGTGGCACCGATTCTGTTTCACACCAAGTGCATGCTGATGCTGTTGGCAACAAAAAGAATTACGCCATCTTTCCAAGGAAAGGTGAAGTTTGGGCATTATATAGAAAGTGGTCAAATAAAATCAAATGTTCTGACTTGAAAAATTGGGAGTATGACATAGTTGAAGTTCTTGAAGAAACTGATTTATTTACAAATGTTCTAGTATTGGAGTTTGTTAGTGGTTTTAGTTCCATTTTCAGGGGCAAGTCAAATGAAGGATCATCTGTCAACCTGAGAATACCCAGAAAAGAGTTGCTTAGGTTCTCCCACAGAATTCCAGCTTTCAAACTGACAGAAGAGCATGGCAATCTGAGTGGCTTCTGGGAACTTGATCCAGGTGCGCTACCAATTCATTATTATGGCTTGGGATGA 2901 0.4126 MDCNKEEALRARDIAEKKMESRDFMGARKFALKAQQLYPDLENIAQMLVVCDAHCSAEMKLFGNEMDWYGILQLEQTASDAMIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDIEKRSQFDMKRRVPMNKTAMSRRNQQKAPMNSSSAMKTNVRPNFANSNTQQQQQQYKQPVQQQQNGGRPTFWTVCPFCSVKYQYYREVLNKPLRCQHCNRPFIAYNVDRKSTSSATNSSQQAFGQQKDGLNHGPSKMGGSQGNLHAEKSNTGLHEKKGPVDVSGKPHGKRKRNKEAESSQSSDFTSSTDSEGGRVVGEDGVPGVENHSTYREEQPRRSARQKHKVSYKDNVSDNDDDLLRPSKRGKECGSPCGDGESHGERIRKNDQNGLAAEESLRDRNEETKVARGKAVGGSKQMDETSEHSFSDLASKATNHPNAYVYFEAEFSDFDKDKKKECFVAGQIWAVYDTTHGMPRFYALIRKVLSPRFKLQITWLESHPGNNDEMKWVNEDMPVACGKYKLGDTNIMEDHLIFSHVVTCEKIGRNTFKVYPRKGETWALFKNWDIKWYMDAASHKQYEYEFVEILSDYVEGEGVYVAHLAKLKGFVGLFFRIRKEDNQSFQIPPQELFRFSHRVPSFKMTGQEGVDVPVGSYELDPAALPMNLEETAVPENLDLKFGHSSGTENTRSSERSEPPMTSDREVPTPKVNLQRSNLAENKDSVDDIDDCHASPASTLEAIVVPDTQFFNFDAERSLEKFQIGQIWAFYSDEDGLPKYYGQIDGIETSPHLELHVSWLACCWLPENTTRWEDKDMVISCGRFEVNKRIDFLSVYSGTDSVSHQVHADAVGNKKNYAIFPRKGEVWALYRKWSNKIKCSDLKNWEYDIVEVLEETDLFTNVLVLEFVSGFSSIFRGKSNEGSSVNLRIPRKELLRFSHRIPAFKLTEEHGNLSGFWELDPGALPIHYYGLG. 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11650 966 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 959 - -
Seca3g11650 966 MobiDBLite consensus disorder prediction 677 691 - -
Seca3g11650 966 Pfam DnaJ domain 67 128 IPR001623 -
Seca3g11650 966 MobiDBLite consensus disorder prediction 233 426 - -
Seca3g11650 966 Gene3D DnaJ domain 64 188 IPR036869 -
Seca3g11650 966 MobiDBLite consensus disorder prediction 138 162 - -
Seca3g11650 966 MobiDBLite consensus disorder prediction 269 298 - -
Seca3g11650 966 MobiDBLite consensus disorder prediction 325 408 - -
Seca3g11650 966 CDD DnaJ 67 120 IPR001623 -
Seca3g11650 966 Pfam Domain of unknown function (DUF3444) 439 643 IPR024593 -
Seca3g11650 966 Pfam Domain of unknown function (DUF3444) 736 943 IPR024593 -
Seca3g11650 966 SMART dnaj_3 66 123 IPR001623 -
Seca3g11650 966 MobiDBLite consensus disorder prediction 130 162 - -
Seca3g11650 966 PRINTS DnaJ domain signature 69 87 IPR001623 -
Seca3g11650 966 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca3g11650 966 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca3g11650 966 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Seca3g11650 966 MobiDBLite consensus disorder prediction 233 248 - -
Seca3g11650 966 MobiDBLite consensus disorder prediction 670 722 - -
Seca3g11650 966 SUPERFAMILY Chaperone J-domain 62 133 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11650 Seca-Chr3 264968172 264972094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11650 4 227 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.061 3.69e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11650 - - gmx:100795200 1422.91