Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11647 ATGTGGCAGAGAAGCCACGAGTCTTCTGAGGAGAGGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAGACATGAAAAACGTCAAGAGAGAAAGAGATGAATCACCACTCACTCTTGGTTGCCTTTCAAGCACCTCCACATGCTATCACCAGCATAATCCTCAGCAGGCTAAAGCTAAAGTTTCATCCTTTCTTCAGCTTCAATCAAGCCCACAAAACATGCCAAGGATGGGAGAGAAGAATGCATTCTTATCCTCTTCTGCAAATTCAGATGTGCCTAAAAAGTCTCAAAAAAGAACTGCTGCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATCCAGGAAGAATCTTGCAAGTGGAAGCTCTTCTAAGTCACCTTCTGGGTCCCAGCAACATCAACATGTGGTTCCAGACAAGGTTGCTAGCAGCAACAAACCTATTGGGAACTCTGGTGGTAAAGGGTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGTAGAAAAGTGGACATCAATGCTTACAACAGTTATGAAAAACTTTCATCTGCTGTTGATGAGCTCTTTAGAGGCCTCCTTTCAGAAATAAATTTATCTCATGTTGTGTTTTCCCACTGCTGTTCTGCTGAAAGAGATTCCTCTGCTGGTGGAATTCACAACAAGGAAGAGGAAGAGAAAACCATCACGGGTTTATTGATTGGAAGCGGGGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTTGGAGATGTGCCGTGGCAGTAA 795 0.4365 MWQRSHESSEERKLELRLGPPGEESLNEDMKNVKRERDESPLTLGCLSSTSTCYHQHNPQQAKAKVSSFLQLQSSPQNMPRMGEKNAFLSSSANSDVPKKSQKRTAAGPVVGWPPIRSSRKNLASGSSSKSPSGSQQHQHVVPDKVASSNKPIGNSGGKGLFVKINMDGVPIGRKVDINAYNSYEKLSSAVDELFRGLLSEINLSHVVFSHCCSAERDSSAGGIHNKEEEEKTITGLLIGSGEYTLVYEDNEGDKMLVGDVPWQ. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11647 264 SUPERFAMILY CAD & PB1 domains 152 264 - -
Seca3g11647 264 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 263 IPR003311 GO:0005634|GO:0006355
Seca3g11647 264 ProSiteProfiles PB1 domain profile. 160 264 IPR000270 GO:0005515
Seca3g11647 264 MobiDBLite consensus disorder prediction 55 101 - -
Seca3g11647 264 Gene3D - 155 264 - -
Seca3g11647 264 MobiDBLite consensus disorder prediction 55 153 - -
Seca3g11647 264 MobiDBLite consensus disorder prediction 120 153 - -
Seca3g11647 264 Pfam AUX/IAA family 14 264 IPR033389 -
Seca3g11647 264 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11647 Seca-Chr3 264942263 264945078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11647 164 263 B3 DNA Binding Superfamily AT4G23980 30.000 9.91e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca3g11647 AUX_IAA 1.8e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11647 K14484 - gmx:100793822 327.405