Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11640 ATGGGCAAAGCTAGCAGGTGGTTCAAGGGCTTGTTGGGCATGAAGAAGGAGAAGGACCATACTGACAATTCTGGCTCATTGACCCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCTAAGCAAGGGAAGGATGTTCCACCTCCTTCTCACATTGCTACTCCCTCTCCCACTGTTGTTCCATCCTCTGATAATGCTTGGTTCAGATCCTATATGGCTGAAACAGAGAACCAGCAGAACAAGCATGCAATTGCTGTGGCAGCTGCCACCGCCGCCGCCGCTGATGCTGCTGTGGCGGCGGCTCAAGCAGCTGTGGCTGTTGTGAGGCTCACAAGTCAGGGTAGAGGCACATTGTTCAGTGGGAGCAGAGAGAAGTGGGCTGCAGTAAAGATCCAAACTTTTTTCAGAGGCTATTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGCTTTCTAGTTAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAGCTGCTGTTAGAACACAGAGAGCTCGTCGTTCCATGAGCAAAGAAAATAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGCAAAAGACTACCTACATCTTATGAAGCATCATTGAATGGATTTGATGAAAGCCCCAAAATTGTTGAAATTGACACTTTCAAGACTCGATCAAGATCTAGGCGCTTTACTTCTACAATGTCTGAATGTGGAGATGACTTGCCCTGTCATGGAATGTCATCCCCTCTTCCTTGTCAAGTCCCTGGCAGAATCTCAGTTCCTGATTGCAGACATAATCAAGACTTTGATTGGTACTTCAATGTTGATGAGTGTAGGTTCTCCACAGCACATAGCACCCCTCGTTTCACAAATTTTATGCGTCCTCCTAATGCTCCAGCTACACCAGCTAAGAGTGTTTGTGGAGAAACTTTCTTCAGACCTTACTCCAATTTCCCAAGCTACATGGCAAATACTCAGTCATTTAAGGCAAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACCTAAGAAAAGGCTTTCACTCAATGACATGATGGCAGCAAGAAATAGCATAAGTGGTGTTAGAATGCAAAGGCCATCCAATTTCCAGACTCAAGATTCCTGGAATTTTTGA 1215 0.4494 MGKASRWFKGLLGMKKEKDHTDNSGSLTPDKKEKKRWSFAKQGKDVPPPSHIATPSPTVVPSSDNAWFRSYMAETENQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGTLFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGFLVRKRAAATLHSMQALIRAQAAVRTQRARRSMSKENRFLPEVLARKSVERFDETRSEFHSKRLPTSYEASLNGFDESPKIVEIDTFKTRSRSRRFTSTMSECGDDLPCHGMSSPLPCQVPGRISVPDCRHNQDFDWYFNVDECRFSTAHSTPRFTNFMRPPNAPATPAKSVCGETFFRPYSNFPSYMANTQSFKAKLRSHSAPKQRPEPKKRLSLNDMMAARNSISGVRMQRPSNFQTQDSWNF. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11640 404 Pfam IQ calmodulin-binding motif 126 145 IPR000048 GO:0005515
Seca3g11640 404 Pfam IQ calmodulin-binding motif 151 165 IPR000048 GO:0005515
Seca3g11640 404 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Seca3g11640 404 Pfam Protein of unknown function (DUF4005) 312 386 IPR025064 -
Seca3g11640 404 ProSiteProfiles IQ motif profile. 172 201 IPR000048 GO:0005515
Seca3g11640 404 MobiDBLite consensus disorder prediction 1 59 - -
Seca3g11640 404 PANTHER IQ-DOMAIN 5-RELATED 1 376 - -
Seca3g11640 404 MobiDBLite consensus disorder prediction 384 404 - -
Seca3g11640 404 MobiDBLite consensus disorder prediction 387 404 - -
Seca3g11640 404 SMART iq_5 123 145 IPR000048 GO:0005515
Seca3g11640 404 SMART iq_5 146 167 IPR000048 GO:0005515
Seca3g11640 404 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Seca3g11640 404 Gene3D - 65 149 - -
Seca3g11640 404 MobiDBLite consensus disorder prediction 10 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11640 Seca-Chr3 264894672 264897834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11640 1 390 IQD Protein Family AT3G16490 54.342 7.61e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11640 - - gmx:100797686 647.506