Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11630 ATGGCGACGCCGGGAGCAATGTTGGAGGGAGGAGCGCCGCAACCTCCGGGGACGGACATGACCGGAATATGCTTCAGAGACCAGCTGTGGCTCAACACATACCCTCTCGATCGCAATCTTGTCTTTGATTACTTCGCCTTATCCCCTTTCTACGATTGGACCTCCAACAACGAGCAACTCCGAATGCGCTCTCTCCACCCCCTCGACCTCTCTCAATTATCGAAAATGACAGGCATTGAGTATGTGCTCAGTGAAGTTATGGAGCCCCACCTGTTTGTTATTCGCAAGCAAAAGAGGGATAGCCCTGACAAAGTTACACCCATGCTTGCTTATTACGTCTTGGATGGTTCAATATACCAGGCTCCACAACTATGCAATGTTTTTGCTGCTCGAATTGGAAGGGCACTCTATTATATACAAAAGGCCTTTACTACAGCTGCCTCAAAGTTGGAGAAGATAGGATACGTTGATTCTGAAAATGAGACTGCATTGCTGGAGTCGAAGGTTGGTAAGGAGACAATTGATGTGAAGGAAGTTAAGCGAGTGGATCATATTCTTGCATCCTTGCAACGCAAGGTAAGTTGTAGAAACACAACTTTCCCATGTTTCCATATCAAACAATTATTTAGCACACTATTACAAGTTTCTAACAATTTTTATACTAAAAGAAAAGGGTCCAGGAAAGAGTGA 690 0.4493 MATPGAMLEGGAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTSNNEQLRMRSLHPLDLSQLSKMTGIEYVLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYVDSENETALLESKVGKETIDVKEVKRVDHILASLQRKVSCRNTTFPCFHIKQLFSTLLQVSNNFYTKRKGSRKE. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11630 229 PANTHER MED-6-RELATED 3 197 IPR007018 GO:0003712|GO:0006357|GO:0016592
Seca3g11630 229 Pfam MED6 mediator sub complex component 23 148 IPR007018 GO:0003712|GO:0006357|GO:0016592
Seca3g11630 229 Gene3D Mediator complex, subunit Med6 17 146 IPR038566 -
Seca3g11630 229 FunFam Mediator of RNA polymerase II transcription subunit 6 17 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11630 Seca-Chr3 264728465 264731849 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Seca3g11630 Med6 7.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11630 K15128 - gmx:100792248 351.673