Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11625 ATGACTTTTGGGCTAGCTATTGCAATTTGCAAATCTTGGGATTTATCAAACAATAGCTTAAGTGGTCCCGTACCTGATTTTCTGACACAGCTTCACTCACTAAAAGTGTTATCAAAAAAAGGTTCACTATCATTGAGGTATGCCTCATCTCAAAGCTATGGATCAGATCTAAGAAGCATTGACCAAAATCCAAATCTGTGTGAATCTACTTCATGCAACCAACAAACAGACAATCAGGAGAAGGAGAAGAAGAATATAGTTATTCCCGTAGTAGCATCAGTTGCTGGGATAGAATCCAAGCAAATTAGGCAATATACGTTCGACGATCTTACAAAGATCAAAAACAACTTTGATAGAGTTCTTGGTAAAGGTGGATTTGGAACAGTTTATCATGGCCTTATTGATGACACCCAAGTAGCTGTCAAGATGCTTTCTCCATCAACTGTTAAACTTCTGATGAGAGTTCATCACAAAAATCTGACTTCTCTTATTGGTTATTGCAATGAAGAAAACAATAAAGGGCTCATCTATGAATACATGGCAAGTGGAAACCTGGCTGATCACATTTCAGGAAAAAGTAGCAGGGCAAAGTTCTTCAATTGGGAAGATCGACTCCGAATAGCAGTGGATGCAGCCCAAGGACTGGAACATCTGCATAATGGTTGCAAGCCACCTATAATCCACAGAGATGTGAAAACTACAAATATTTTGTTAAATGAAAACTTCCAAGCAAAACTGGCTGATTTTGGGCTATCCAAAACCTTTCCCACTGATGGAGGGACGCATTTGTCCACCGTTGTTGCTGGAACTCCTGGTTACCTTGATCCTGATTATGGCATATCAAGCAGGTTGACAGAGAAAAGTGATGTTTACAGCTTTGGAGTTGTTCTTTTGGAGATAATCACAAGTCAACCAGCTATATCAAAAACACCAGAGAAGACTCACATAAGTGAGTGGGTTAGGTCCATGGTTTCTAATGGAGATATTAAAAATATTGTTGACTCAAGATTACATGAAGATTTTGAGACTAGCTCTGTCTGGAAAGCTGTTGAAATAGGAATAGCTTCTGTGTCCATCAATCCTACCAGAAGGCCAAACATGAGTGGTGTTGTGAACGAGTTAAAGGAGTGTTTGGCTACAGAGTTAGCTAGAAAAAGGGCTGGTCGTGACACTGAAAACAACGATTCAATTGAGTTGGTATCCTTACTGACAACTGAAGTCGGTCCCCTGGCTAGGTAG 1239 0.3995 MTFGLAIAICKSWDLSNNSLSGPVPDFLTQLHSLKVLSKKGSLSLRYASSQSYGSDLRSIDQNPNLCESTSCNQQTDNQEKEKKNIVIPVVASVAGIESKQIRQYTFDDLTKIKNNFDRVLGKGGFGTVYHGLIDDTQVAVKMLSPSTVKLLMRVHHKNLTSLIGYCNEENNKGLIYEYMASGNLADHISGKSSRAKFFNWEDRLRIAVDAAQGLEHLHNGCKPPIIHRDVKTTNILLNENFQAKLADFGLSKTFPTDGGTHLSTVVAGTPGYLDPDYGISSRLTEKSDVYSFGVVLLEIITSQPAISKTPEKTHISEWVRSMVSNGDIKNIVDSRLHEDFETSSVWKAVEIGIASVSINPTRRPNMSGVVNELKECLATELARKRAGRDTENNDSIELVSLLTTEVGPLAR. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11625 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Seca3g11625 412 Pfam Protein tyrosine and serine/threonine kinase 117 373 IPR001245 GO:0004672|GO:0006468
Seca3g11625 412 SUPERFAMILY Protein kinase-like (PK-like) 99 374 IPR011009 -
Seca3g11625 412 Gene3D Phosphorylase Kinase; domain 1 91 179 - -
Seca3g11625 412 Gene3D Transferase(Phosphotransferase) domain 1 180 399 - -
Seca3g11625 412 ProSitePatterns Protein kinases ATP-binding region signature. 121 142 IPR017441 GO:0005524
Seca3g11625 412 ProSiteProfiles Protein kinase domain profile. 115 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11625 412 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 180 387 - -
Seca3g11625 412 PANTHER OS07G0107800 PROTEIN-RELATED 10 378 - -
Seca3g11625 412 SMART serkin_6 115 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11625 Seca-Chr3 264686573 264689001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11625 14 412 Receptor kinase-like Gene Family AT1G51850 48.359 2.51e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca3g11625 PK_Tyr_Ser-Thr 4.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11625 - - gmx:100779474 570.466