Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11624 ATGGATGATCACAAAAAGAAGAAGAAAAATAATATAGTTATTCCAGTTGTAGCATCACTTGCTGGGGTTGTGTTACTCCTAGTAATTGTTGCAGCAGCTATAATCTGTGGCCTTAAAAAAAGAAAACCACGAGGGAAATTAGCAATTGTGAACAGTCATATGGAGCCCAATACTCCAAATGTGTCAGTGTCACAACTGGAATCCAAGCAAAGACAATATACATTCGATGAACTTACTAAGATCACCAACAACTTTGATAAAATTCTTGGTAGAGGTGGATTTGGACCAGTTTATCATGGCTTGATTGATGACACTCAAGTAGCTGTCAAGATGCTTTCTCAATCAGCAGTACGAGGATATCAACAATTTTTAGCAGAGGTTAAACTTCTCATGAGAGTTCATCATAAAAATCTGACTTCTCTTATTGGTTATTGCAATGAAGAAGCCAATATAGGGCTTATCTATGAATATATGGCAAATGGAAACCTTGATGAACATCTTTCAGGAAAAAATAGCAAGGCAAAGTTCTTCAGTTGGGAAGACAGACTCCGAATAGCACTGGATGCAGCCCAAGGACTGGAATATCTGCATAATGGTTGTAAGCCACCTATAATCCACAGAGATGTGAAAACTACAAATATCTTATTAAATGAAAACTTCCAAGCAAAATTGGCTGATTTTGGGCTATCCAAAACCTTTCCCACTGATGGAGGCACACATTTGTCCACTGTTGTTGCTGGAACTCCTGGTTACCTTGATCCTGAGTACAGCATATCAAGCAGGTTGACAGAGAAAAGTGATGTTTACAGCTTTGGAGTTGTTATTTTGGAGATAATCACAAGTCAACCAGCTATATCAAAAACGCATGAGAAGATTCACATAAGTCAGTGGGTTAGCTCTATGCTTTCAAATGGAGATATTAAAAATATTGTTGACTCAAGATTACATGAAGACTTTGAAACTAGCTCTGTGTGGAAAGCTGTTGAAATAGGAATGACTTCTGTGTCCATCAATCCTGCCAGAAGGCCAAACATGAGTGATGTTGTCAACGAGCTAAAGGAATGTTTGGCTACAGAGTTAGCTAGAAAAGGGGTTGGTCGTGACACTGAAAACAATGATTCAATTGAGTTGGTATCCTTAAATCTTACAACTGAACTCGGCCCCCTAGCTAGGTATTGTTTCTACCTCTCAGGATTCATTAGCATAGATTGTGGACTACCAGAAAATTCGAGCTATGCAGAGAAGAACACAGGCATCAATTACATTTCAGATGCTAAATTCATAGATGCTGGTGTAAGCAAGAGTATATCACCAGAAGAGAAGATTACTCATCAACAACAATTAGCTCATGTGAGGAGCTTTCCTAGTGGAGTCAGAAACTGTTACAGAATCAATGTAACCAGTGGTACCAAATATTTAATCCGAGCTACTTTCTATTATGGAAACTATGATGATCTAAATGAGGTACCACAATTTGAACTTCATCTTGGAGCTAATTTGTGGGACAAGGTGAAATTCCCCAATATATCACTCCCCACAATCAATGAGATCATATACACCCCATCACTAGACCATATACATCTGTGTCTGGTCAACTCAGGCACAGGGACTCCATTCATTTCAGCTATAGAATTGAGGATTTTGAACAATGATACATATGACACTCACTCAACTGATGAAACATTGGCATTCTTTCGCCGATATGATTTAGGTTCCAACCCCAACAAAGAATACAGGTACAAAGATGATGTTTATGATCGCATTTGGACAAATCTCGCATTCAATCGGTGGACACAATTAAGTACCACATTAAATCCTGATGATCTTGCTCAGAATGAGTATAAACCACCAGCAGTTGTCATGAGCACTGCTGCTATACCAATAAATGTCAGTGCTCCTTTTCAGTTCTATTGGGATTCGGATAATGTAAACGAAAAGTACTACATCTACATGCACTTTAATGAGGTTGAAAAGCTTGCAACAAATGAATCAAGAGCATTTGATATCTACATGAATGACAAGCATTGGTATGGACCTCTGGTACCTTCATACCAAACAACAACTACCATATTTAGTCCATCAGCTTTGACTGGAGACACAAGATATCTATTTTCACTTTCTAAGACAGAGAATTCCACCCTTCCGCCCATCATCAATGCTTTTGAGATTTATACAGTAAAAGATTTCTCACAATCAGAAACTGAACAAGATGATGTTGATGCTATCACAAACATCAAGAAAGGCTATGGAGTGGCTAGAAATTGGCAAGGAGATCCATGTGCCCCTGTAGCATACATGTGGGAAGGCCTAAACTGCAGTTTTGATGGCAATAACCCCCCAAGAATTACATCCTTGAACTTGTCTTCAAGTGGACTGACCGGGCAAATAGCATCTTCCATCTCCAAGCTCACTATGTTACAGTACTTGGATTTGTCAAACAATAGCTTAACCGGTCCAGTACCTGATTTCCTGACACAACTTCAGTCACTAAAAGTCTTGTAA 2502 0.3885 MDDHKKKKKNNIVIPVVASLAGVVLLLVIVAAAIICGLKKRKPRGKLAIVNSHMEPNTPNVSVSQLESKQRQYTFDELTKITNNFDKILGRGGFGPVYHGLIDDTQVAVKMLSQSAVRGYQQFLAEVKLLMRVHHKNLTSLIGYCNEEANIGLIYEYMANGNLDEHLSGKNSKAKFFSWEDRLRIALDAAQGLEYLHNGCKPPIIHRDVKTTNILLNENFQAKLADFGLSKTFPTDGGTHLSTVVAGTPGYLDPEYSISSRLTEKSDVYSFGVVILEIITSQPAISKTHEKIHISQWVSSMLSNGDIKNIVDSRLHEDFETSSVWKAVEIGMTSVSINPARRPNMSDVVNELKECLATELARKGVGRDTENNDSIELVSLNLTTELGPLARYCFYLSGFISIDCGLPENSSYAEKNTGINYISDAKFIDAGVSKSISPEEKITHQQQLAHVRSFPSGVRNCYRINVTSGTKYLIRATFYYGNYDDLNEVPQFELHLGANLWDKVKFPNISLPTINEIIYTPSLDHIHLCLVNSGTGTPFISAIELRILNNDTYDTHSTDETLAFFRRYDLGSNPNKEYRYKDDVYDRIWTNLAFNRWTQLSTTLNPDDLAQNEYKPPAVVMSTAAIPINVSAPFQFYWDSDNVNEKYYIYMHFNEVEKLATNESRAFDIYMNDKHWYGPLVPSYQTTTTIFSPSALTGDTRYLFSLSKTENSTLPPIINAFEIYTVKDFSQSETEQDDVDAITNIKKGYGVARNWQGDPCAPVAYMWEGLNCSFDGNNPPRITSLNLSSSGLTGQIASSISKLTMLQYLDLSNNSLTGPVPDFLTQLQSLKVL. 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11624 833 SMART serkin_6 83 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11624 833 FunFam Leucine-rich repeat receptor-like kinase 737 833 - -
Seca3g11624 833 FunFam Leucine-rich repeat receptor-like protein kinase 61 157 - -
Seca3g11624 833 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 158 364 - -
Seca3g11624 833 CDD STKc_IRAK 89 354 - -
Seca3g11624 833 ProSiteProfiles Protein kinase domain profile. 83 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11624 833 SUPERFAMILY L domain-like 765 833 - -
Seca3g11624 833 Gene3D Phosphorylase Kinase; domain 1 64 157 - -
Seca3g11624 833 Pfam Malectin-like domain 402 726 IPR024788 -
Seca3g11624 833 Gene3D Transferase(Phosphotransferase) domain 1 158 374 - -
Seca3g11624 833 Pfam Protein tyrosine and serine/threonine kinase 85 352 IPR001245 GO:0004672|GO:0006468
Seca3g11624 833 Gene3D Ribonuclease Inhibitor 739 833 IPR032675 -
Seca3g11624 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Seca3g11624 833 PANTHER OS07G0107800 PROTEIN-RELATED 400 833 - -
Seca3g11624 833 SUPERFAMILY Protein kinase-like (PK-like) 59 352 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11624 Seca-Chr3 264669062 264679271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11624 398 833 Receptor kinase-like Gene Family AT1G51850 44.898 3.90e-111 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca3g11624 Malectin_like 3.3e-114 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11624 - - minc:123206351 837.795