Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11623 ATGATGGGAATATCGCTGCATTTTCTTGTGGTGTTGTTTGGGCTCCTTCCATTGGTGGTTCTGATACAAGCTCAGGATCAATCAGGATTCATTAGCTTAGATTGTGGATTACCTGAAAATTCGAGCTATACACAGCGCACTACAGGCATAAATTACATTTCAGATGCAAAATTCGTAGATACTGGTGTCAGTAGGAGAGTATCACCAACAGAGAAGATTAATCTAAAACAGCAGCTACGTTATGTGAGGAGCTTTCCTAGTGGAGTGAGAAACTGTTACAGAATAAATGTAGCCAGAGGCACAAAATATTTAATCCGAGCTACTTTCTATTATGGAAACTACGATGAACTAAATCAGGCGCCACAATTTGATCTTCATCTTGGACCTAATATTTGGGATACAGTGAAGTTCCCCAATGCATCACTAGTCGCATACCGTGAGATCATTCACACTCCATCACAGAATTATATACATCCGTGTCTGGTTAACACAGGCACAGGAACTCCATTCATTTCAGCTATAGAATTGAGGATTTTGAATGACAAAACTTATAACACTGACACAATTACTGGATCATTGGCACTCCTCGGACGATACGATATTGGTTCCATCACCAACTTAGAATACAGGTACAAAGATGATGTTTATGACCGCCTCTGGATGCCTTATGTATTCAAAGGGTGGACACCCAAAAACACATCATACAATAATCCACTTCAGCGGAATAATTATGAACCGCCAGCAGTTGTCATGAACACTGCGGCTACACCAGTAAATGCCAGTGCTCCTTTGGAGTTATCCTGGGATCCGGATACAGATATTGTAAAGGACCAACTCTACATCTACATGCACTTTAATGAGGTTGAAAACCTCCCAGAAAATGAAACCAGAGAGTTCAATATTCTCATAAATGGTGCTCATTGGTACGGACCCATGCTACCTGAATACCAAAATGCAACTACAATATTTAGCCGGTCACCTCCCACTCCAGCAAAAACCTATCGATTTTCGCTTGTTAGAACAGAGAATTCCACCCTTCCTCCCATCCTCAATGCCTTTGAGTTTTATATGCTAAAAGATTTCTCACAATCAGAAACTCAACAAGATGATGTTAATGCTATCACAAACATCAAGGACGCTTATGGGGTGGCTAGAAATTGGCAAGGAGATCCATGTGCCCCTGTAGCATACATGTGGGAAGGCCTAAACTGTAGTATTGATGGCAATAACCCCCCAAGAATTACATCTTTGGATTTATCTTCAAGTGGATTGACCGGGCAGATAGCATCTTCCATCTCTAAGTTCACTATGTTAGAGTACTTGGATTTATCAAACAATAGCTTAAGCGGTCACGTGCCTAATTTCCTGACACTACTGCAGTCACTCAAAGTCTTAAACTTGGGGAAGAACAACCTTACAGGTGTAGTTCCATCTGAACTCCTTGACAGATCTAATACAGGCTCACTGATATTAAGCGTGGAGCAAAATCCAAATCTATGTGAATCTGCTATATGCAACCAGCAGACAGATGATCAAAAGAAGAAAAATACCATTGTTATTCCAGTATTAGCATCAGTTGCTGGGGTTTTGGTGCTCCTAGCAATTGCAGCATTAGCTATTGTTTGTGGCCTTAAAAAAAATAGACCACGAGCAACTGTGAACAGTCAAGTGGAGCCCAGTACTCCAAATGTGTCACAATTGGAATCCAAGCAAAGACAATATTCATTCAATGAACTTTCTAAGATCACAAACAACTTTGATAGAGTTCTTGGTAGAGGTGGATTTGGAACAGTTTATCATGGCTTTGTTGATAATACTCAAGTAGCTGTCAAGATGCTTTCTCAATCAGCAGTTAAACTCCTGATGAGAGTTCATCACAAAAATCTGACTTCTCTTATTGGGTATTGCAATGAAGAAACCAATATAGGGCTCATATATGAATATATGGCAAATGGAAACCTGGAAGAACATCTTTCAGGAAAACATAGTAGGGCAAAGTTCTTCACTTGGGAAGACAGACTTCGAATAGCAGTGGATGCAGCCCAAGGACTGGAATATCTACATAACGGTTGCAAGCCACCTATAATCCACAGAGATGTGAAAACTACAAATATTTTATTAAATGAAAATTTCCAAGCAAAATTGGCAGATTTTGGCCTATCCAAAACCTTTCCCACTGATGGATGGACACATTTGTCCACTGTTGTTGCTGGAACTCCTGGTTACCTTGATCCTGAGTATGGCATATCAAGCAGGCTGACAGAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAGATAATCACAAGTCAACCAGCAATATCAAAAGCACCAGAGAAGATTCACATAAGTCAGTGGGTTAGCTCCTTGCTTTCTAATGGAGATATTAAAAATATTGTTGACTCAAGATTACATGAAGACTTTGACACTAGCTCTGTCTGGAAAGCTGTTGAATTAGGAATGGCTTCTGTGTCTATCAATCCTGCCAGAAGGCCAAACATGAGTGACATAGTGACCGAGCTAAAGGAGTGTTTGACTGCAGAATTAGCTCGAAAAAGGTCTGGTGGTGACACTGAAAACATCGATTCAGTTGAGTTAGTATCCTTAAATCTGGAAACTGAATTCTGTCCCCTGGCTAGGTAG 2649 0.4032 MMGISLHFLVVLFGLLPLVVLIQAQDQSGFISLDCGLPENSSYTQRTTGINYISDAKFVDTGVSRRVSPTEKINLKQQLRYVRSFPSGVRNCYRINVARGTKYLIRATFYYGNYDELNQAPQFDLHLGPNIWDTVKFPNASLVAYREIIHTPSQNYIHPCLVNTGTGTPFISAIELRILNDKTYNTDTITGSLALLGRYDIGSITNLEYRYKDDVYDRLWMPYVFKGWTPKNTSYNNPLQRNNYEPPAVVMNTAATPVNASAPLELSWDPDTDIVKDQLYIYMHFNEVENLPENETREFNILINGAHWYGPMLPEYQNATTIFSRSPPTPAKTYRFSLVRTENSTLPPILNAFEFYMLKDFSQSETQQDDVNAITNIKDAYGVARNWQGDPCAPVAYMWEGLNCSIDGNNPPRITSLDLSSSGLTGQIASSISKFTMLEYLDLSNNSLSGHVPNFLTLLQSLKVLNLGKNNLTGVVPSELLDRSNTGSLILSVEQNPNLCESAICNQQTDDQKKKNTIVIPVLASVAGVLVLLAIAALAIVCGLKKNRPRATVNSQVEPSTPNVSQLESKQRQYSFNELSKITNNFDRVLGRGGFGTVYHGFVDNTQVAVKMLSQSAVKLLMRVHHKNLTSLIGYCNEETNIGLIYEYMANGNLEEHLSGKHSRAKFFTWEDRLRIAVDAAQGLEYLHNGCKPPIIHRDVKTTNILLNENFQAKLADFGLSKTFPTDGWTHLSTVVAGTPGYLDPEYGISSRLTEKSDVYSFGVVLLEIITSQPAISKAPEKIHISQWVSSLLSNGDIKNIVDSRLHEDFDTSSVWKAVELGMASVSINPARRPNMSDIVTELKECLTAELARKRSGGDTENIDSVELVSLNLETEFCPLAR. 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11623 882 PRINTS Leucine-rich repeat signature 459 472 - -
Seca3g11623 882 PRINTS Leucine-rich repeat signature 438 451 - -
Seca3g11623 882 SUPERFAMILY L domain-like 397 492 - -
Seca3g11623 882 PANTHER OS07G0107800 PROTEIN-RELATED 31 847 - -
Seca3g11623 882 Gene3D Transferase(Phosphotransferase) domain 1 649 866 - -
Seca3g11623 882 Gene3D Ribonuclease Inhibitor 371 498 IPR032675 -
Seca3g11623 882 FunFam Leucine-rich repeat receptor-like kinase 369 502 - -
Seca3g11623 882 Gene3D Phosphorylase Kinase; domain 1 565 648 - -
Seca3g11623 882 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 649 856 - -
Seca3g11623 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Seca3g11623 882 ProSiteProfiles Protein kinase domain profile. 584 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11623 882 Pfam Protein tyrosine and serine/threonine kinase 586 843 IPR001245 GO:0004672|GO:0006468
Seca3g11623 882 ProSiteProfiles Leucine-rich repeat profile. 437 459 IPR001611 GO:0005515
Seca3g11623 882 CDD STKc_IRAK 590 845 - -
Seca3g11623 882 SMART serkin_6 584 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11623 882 Pfam Malectin-like domain 33 357 IPR024788 -
Seca3g11623 882 SUPERFAMILY Protein kinase-like (PK-like) 564 843 IPR011009 -
Seca3g11623 882 ProSitePatterns Protein kinases ATP-binding region signature. 590 619 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11623 Seca-Chr3 264648371 264652557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11623 2 882 Receptor kinase-like Gene Family AT1G51800 48.512 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca3g11623 Malectin_like 1.1e-111 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11623 - - gmx:100779474 1221.07