Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11621 ATGGCTGCAAGCTTTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGTTCAATGGATTAAGCAACAGCTCCCCGGGTTTATTTACCACATCACATGAGATGACATGCAACAGTTATTTTTCTCAGCAGCAGCAACGCACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTGGACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAGGGGAAGAAAGGGGCTAGATTAGGTGACACAATAGTAGCATCAGTGAAGGAAGCCCATCCTAACGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGGGTAGTTGTGCGCGCAGCAATGCAAAAGGGAAGATGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAGCCTATTGGGACCAGAGTTTTTGGGCCAGTGCCTCATGAGCTGAGGCAGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCATAG 504 0.4722 MAASFASRCSRVGRSLFNGLSNSSPGLFTTSHEMTCNSYFSQQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11621 167 Gene3D Ribosomal protein L14 48 167 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca3g11621 167 Pfam Ribosomal protein L14p/L23e 49 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca3g11621 167 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 49 166 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca3g11621 167 Hamap 50S ribosomal protein L14 [rplN]. 48 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca3g11621 167 ProSitePatterns Ribosomal protein L14 signature. 105 131 IPR019972 -
Seca3g11621 167 FunFam 50S ribosomal protein HLP, mitochondrial-like 48 167 - -
Seca3g11621 167 SUPERFAMILY Ribosomal protein L14 49 166 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca3g11621 167 NCBIfam 50S ribosomal protein L14 49 166 IPR005745 GO:0003735|GO:0006412|GO:0015934
Seca3g11621 167 SMART Ribosomal_L14_2 48 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11621 Seca-Chr3 264628474 264632515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11621 59 150 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 3.62e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11621 K02874 - gmx:100818301 294.278