Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11619 ATGGCTTTAGTTTCTACTGGGTATCACTCAATCGATAGTCTTTGTGGAAGAAGGCAAAACTGGAGATTGAAGGTCAAGCTTGTTAGGAAGTGGAACATGGCAGCCGTTGCAACTCCGGATGACCCTTATGCTCTGCAGATGCTGTTTGTGGATGAAGAGGGGGGTAGGATTGAGGGAACCGTTCAAAAGCACTTAATGCTAAAATTCTCGCGTTGCTTGGTGGAAGGCCATGTTTACAAGGTTATGAATTTTGGAATTATCCGAAATGAAGGCAAATTCCGTGCTTCTCGACATGATTATAAGATCATATTCAACTCCAACACTCAAGTTTCACGCTGCCAAGATGCCTCCGTTCCATTCCTAGGGCTATCATTCAACAATACGTCTGATATCAAGAAGACGAAAGGTTCTTGTGACTACTTATTGGACTTCATGGGGATGGTTACGGCAGTGTCGAAGGAGATACGAGTAAACAAAGAGGAGAGGGTTACCCGTTTGGTTTTGTTGGACTTGGTGGACGACATGGGGACGATCCGATGCGCTATGTTTGGAACCATGGTTGATATCGTTTTAGAGTGCCTTTCTCAACCTCGGATTGGACTTCCAGTGGTGATTATCCAGTTAGCAAAGGCAAATGTGTACAAGGGACGAGTGGGTATTCAAAATGTGATGAATGCCACTAAGATATGGTGGAATCCCTTGATCCCAGAATGTATTGAGTTTAGAAATGGGGTAGCATTTCATGAGGTAGAATCGGACATGGAGATCTCATTAATATCACAAAGGCCTAGGACTGTGTCCCTGAGGGAGGAGTTTATGAAACAATATCCAAGGAAGACCGTGGCACAGCTGCTCCAAGTTTGGGAGGTCGGAAATTTCATCACCATGGCCACCATTACTGAGATCGTTGATGAAAAATTGTGGTGGTACACTGCGTGCCCCTGTTTGAGAGCTGTTAACTTTGATAGAGGTTACCCTTTCTGCACTCATTGCAAGCGGATCGTATTTAACATGTCTCCAAGGTTTAAGCTGAAGGTGTTGGCAAGTGATGGGGAAGATGCTGCGCACTTCATCATGTTTGATGCTGAATGCTCCCTGCTGCTGAAGAAGTCTTGCCAGGAATTGCTTGATGAACAAGAGGACCCTTCATTCGATGCATACCCTGAAGAGATATTCAAGTTGGTTGGGCGAGATGTGCTGTTTCGCATTGAGGTGAAGGAACATCCTTTTAATTCCTTTGATGATAGCATCAAGGTTAGGCGGGTTTGTTTTGATTGCTCAATATTGGATGAGTTTAAGGAATGTGTGGACGATGACACTCCAGTGAAGCTTAAGTTTGCTCCAAGTTTCACGAAACTTCATGAAGAACGAGACATGAAAACTGTCCTAGACATGTCTCCGCAATGCAAATCTCTTCTAACCGATGCGGACACAACGCCGTCTTCAGTTGGGCAATCATCATCTGCTGCTCAGGCCAGTGGTAGTTGTTCTAAGAGGGATGTTGACGAGTCATTGGAAAAATCATGGGAATTAAATAAGAGACCAAGGATGACAGGGGTTAACATAGAGGGGGAATGA 1578 0.4461 MALVSTGYHSIDSLCGRRQNWRLKVKLVRKWNMAAVATPDDPYALQMLFVDEEGGRIEGTVQKHLMLKFSRCLVEGHVYKVMNFGIIRNEGKFRASRHDYKIIFNSNTQVSRCQDASVPFLGLSFNNTSDIKKTKGSCDYLLDFMGMVTAVSKEIRVNKEERVTRLVLLDLVDDMGTIRCAMFGTMVDIVLECLSQPRIGLPVVIIQLAKANVYKGRVGIQNVMNATKIWWNPLIPECIEFRNGVAFHEVESDMEISLISQRPRTVSLREEFMKQYPRKTVAQLLQVWEVGNFITMATITEIVDEKLWWYTACPCLRAVNFDRGYPFCTHCKRIVFNMSPRFKLKVLASDGEDAAHFIMFDAECSLLLKKSCQELLDEQEDPSFDAYPEEIFKLVGRDVLFRIEVKEHPFNSFDDSIKVRRVCFDCSILDEFKECVDDDTPVKLKFAPSFTKLHEERDMKTVLDMSPQCKSLLTDADTTPSSVGQSSSAAQASGSCSKRDVDESLEKSWELNKRPRMTGVNIEGE. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11619 525 Gene3D - 117 252 IPR012340 -
Seca3g11619 525 CDD RPA1_DBD_C 293 422 IPR047192 -
Seca3g11619 525 Pfam Domain of unknown function DUF223 47 115 IPR003871 -
Seca3g11619 525 SUPERFAMILY Nucleic acid-binding proteins 124 245 IPR012340 -
Seca3g11619 525 MobiDBLite consensus disorder prediction 499 513 - -
Seca3g11619 525 Gene3D - 268 435 IPR012340 -
Seca3g11619 525 MobiDBLite consensus disorder prediction 474 498 - -
Seca3g11619 525 SUPERFAMILY Nucleic acid-binding proteins 7 117 IPR012340 -
Seca3g11619 525 Gene3D - 8 116 IPR012340 -
Seca3g11619 525 PANTHER OS03G0429900 PROTEIN 7 418 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g11619 525 CDD RPA1_DBD_A_like 22 110 - -
Seca3g11619 525 Pfam Replication factor-A C terminal domain 293 432 IPR013955 -
Seca3g11619 525 SUPERFAMILY Nucleic acid-binding proteins 276 434 IPR012340 -
Seca3g11619 525 MobiDBLite consensus disorder prediction 474 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11619 Seca-Chr3 264554989 264558551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11619 11 411 Core DNA Replication Machinery Family AT4G19130 21.379 8.55e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11619 - - lja:Lj6g3v0884310.1 338.191