Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11617 ATGGATGGTCTGAATTGGGGTGTGAACACATCACCAATCCTGTGGAGTACTCAGCAGCAACAAGACTTTGATGGAGGCTACCCCATATCCAACTTAAGTGCAAGTGTTCCTAATCAAATACAAGAGATGCAGAAAGCTCAAACAGGTCATACATATCAGTCAGCAGTTACTACCACCAGTTCAGAGATAATGGATGTGATGACCAACACAAATCTGTCAGCAATGGTGACAGTGAAATCACTCTCAGGAGCTGGAGCCAGCTGGGGAGAAGCTTTAACTTCTCAATCATGTCCGTCCCTTTCAGTCAATGGACCTTACAGTATGAACCCAATTAGGAACTATATGCCAGATTTCAACATGGCCCACCAACAACAACTTATCAATGGCTCACAAAATGGGAAAGGGACCGGTTCTCTTGACTCTTTTGATTGTTTGCTTTCAGCTACTAATAGCAACACAGACACTTCTGTGGAAGATGATGGGATTTCAATGATTTTATCTGACTGTGGAAACTTATGGAACTTCAGTTATGGCAGTGCAGCTTCCTCTGCTGAATCTGATAGCAATGCTTCCAATGCTAAAAACAAACACATGCAAGGTCCAGTCAATGAACTTGATGAAACAGCAGTGTCTCAAAGCTCCTCAGATCAATATGTCAATCAAGGAAAAACAATAGAATCCAAGGCTAATTGCTCACAATCTGAGCTGATTAAAGTTGGTGCTAGTAGTGATCCATACTTCAGTAGTATTGTTCAGAATTCTTCTCCAAGTGAAGGTGGTTTCAGACTCATCTCAGATAATAATCCAACAAAATGCAAGAAACCAAGATGGGATAAGGTTCCTTCTTCATCTAACATCAATTTCCAGCAGCCAAATTCATCAATGTTATCATCTTCCATTCATCAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAGATGATATATAGAGCTGCAGCTTTTAGGCCTGTGAACTTGGGGTTGGAGGTGATTGAAAAGCCAAAGAGGAAGAATGTGAGGATATCATCTGATCCACAAACTGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTACAGAAGCTTGTGCCAGGGGGAAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCAAACTACCTCAAGTTTCTCAGGTCACAGGTCAAGGCACTGGAAAGTCTAGGGAACAAGGTGAATGCAATGAATTGTCCTCCTACTAGCATTGCTTTCTCTTTCAACCCTTCTTTTCCCATGCAAAATCCATCATCCCAGGGTTGA 1299 0.4242 MDGLNWGVNTSPILWSTQQQQDFDGGYPISNLSASVPNQIQEMQKAQTGHTYQSAVTTTSSEIMDVMTNTNLSAMVTVKSLSGAGASWGEALTSQSCPSLSVNGPYSMNPIRNYMPDFNMAHQQQLINGSQNGKGTGSLDSFDCLLSATNSNTDTSVEDDGISMILSDCGNLWNFSYGSAASSAESDSNASNAKNKHMQGPVNELDETAVSQSSSDQYVNQGKTIESKANCSQSELIKVGASSDPYFSSIVQNSSPSEGGFRLISDNNPTKCKKPRWDKVPSSSNINFQQPNSSMLSSSIHQEPDPEAIAQMKEMIYRAAAFRPVNLGLEVIEKPKRKNVRISSDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVNAMNCPPTSIAFSFNPSFPMQNPSSQG. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11617 432 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Seca3g11617 432 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 140 427 IPR045843 GO:0003700|GO:0006355
Seca3g11617 432 MobiDBLite consensus disorder prediction 258 300 - -
Seca3g11617 432 FunFam BHLH transcription factor 345 409 - -
Seca3g11617 432 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 406 IPR036638 GO:0046983
Seca3g11617 432 MobiDBLite consensus disorder prediction 280 300 - -
Seca3g11617 432 Coils Coil 381 401 - -
Seca3g11617 432 Gene3D - 347 410 IPR036638 GO:0046983
Seca3g11617 432 SMART finulus 348 397 IPR011598 GO:0046983
Seca3g11617 432 Pfam Helix-loop-helix DNA-binding domain 352 391 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11617 Seca-Chr3 264538688 264539986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11617 83 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.790 1.40e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g11617 HLH 2.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11617 - - vra:106773034 556.984