Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11607 ATGGCGACAGTACCAGGTCAGCTCGTGTGGGAGATCGTGAAGAAGAACAACTCATTTTTGGTGAAAGAGTTTGGAAGAGGCACTCAGAGTGTTGAATTCAGCAAAGAGAGCAACAATCTCTACAATCTCAACTCTTTCAAGTACTCTGGTTTGGCGAACAAGAAAACTGTTACCATTCAGCCTGTGGGTAAAGATCTGTCTGTGTTGTTGGCTACAACCAAGACAAAGAAACAAAACAAGCCTTCTGCTTTGCTTCACAAATCGGTCATGAAGAAGGAGTTCAGGAGGATGGCAAAGGCTGTCCAAAATCAGCAGGTGGCAGATAATTACTACAGGCCTGATCTGAAGAAAGCAGCTCTTGCAAGGTTGAGTGCTGTTAACAGAAGCCTCAAAGTTGCCAAGTCTGGTGTCAAGAAGAGGAATAGACAGGCTGTGAAGGTCCGTGGTAGGAAGTGA 456 0.4518 MATVPGQLVWEIVKKNNSFLVKEFGRGTQSVEFSKESNNLYNLNSFKYSGLANKKTVTIQPVGKDLSVLLATTKTKKQNKPSALLHKSVMKKEFRRMAKAVQNQQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKVRGRK. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11607 151 PANTHER 60S RIBOSOMAL PROTEIN L28 1 151 IPR002672 GO:0003735|GO:0005840|GO:0006412
Seca3g11607 151 FunFam 60S ribosomal protein L28 5 134 - -
Seca3g11607 151 Pfam Ribosomal L28e protein family 8 129 IPR029004 -
Seca3g11607 151 Gene3D - 6 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11607 Seca-Chr3 264428406 264430999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11607 1 144 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 72.917 4.87e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11607 K02903 - gmx:100500189 269.24