Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11582 ATGCTTGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGACAAACAAGTGATGATGTTTTCAGCAACACTCAGCAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAGATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTGGTGCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAATCGTAAGTTGAACGATCTTCTTTATGCTCTGGACTTCAACCAAGTTGTTATTTTTGTTAAAAGTATTAGCAGAGCAGCGGAATTGAACAAGTTGCTCGTGGAGTGTAATTTCCCATCGATATGCATACATTCTGGAATGTCTCAGGAAGAAAGGTATTTATTGAAACGATACAAAGGCTTCAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGAATTGATATAGAACGTGTTAATATAGTCGTCAATTATGACATGCCTGATTCTGCTGATACTTATCTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAGGGGCTTACAATTACTTTTGTGTCTTCCACCGCTGATTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAAGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTTCGACATATATGCCAAACTTATGA 690 0.3957 MLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLYALDFNQVVIFVKSISRAAELNKLLVECNFPSICIHSGMSQEERYLLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLTITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPNL. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11582 229 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 202 - -
Seca3g11582 229 Pfam Helicase conserved C-terminal domain 77 184 IPR001650 -
Seca3g11582 229 Gene3D - 1 57 IPR027417 -
Seca3g11582 229 SMART helicmild6 101 184 IPR001650 -
Seca3g11582 229 FunFam DEAD-box ATP-dependent RNA helicase 58 228 - -
Seca3g11582 229 CDD SF2_C_DEAD 62 193 - -
Seca3g11582 229 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 77 224 IPR001650 -
Seca3g11582 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 195 IPR027417 -
Seca3g11582 229 Gene3D - 58 228 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11582 Seca-Chr3 264159157 264164008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11582 1 228 Eukaryotic Initiation Factors Gene Family AT5G11170 92.105 8.83e-156 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11582 K12812 - gmx:100785358 432.565