Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11577 ATGAATATTTGTGATCTTGACACCTTAAATGGAATGGCAGGTGGACTTTCATGGACTTGTGGAGGAGAATTTAATTTGGCTTCTTTCTGCGTTCAAAGAAGCATAATTGATGGAATAAATCTGTTGTTCTTCTGTGTTTTCTTCCTATTTCTGCTCCTAGGTTTAGGTGGAAAACACCATTCAAGTGATATCAGTAGAAAGGACCTTGTTTTGGTGGTTGCATCAATCTGTTGTTTTCTTACTTGCATTTTCTATTTCGGCAATGGTTTATATAATATAATAGATCACAATAATAATTTAACTTGGGTAGCTTATGCTATAAGGGGACTAGTTTGGATCTCTCTTGCAGTTTCATTGCTTAATCAAAGGAGCAAAAGGATCATATGTCTAAACTCTGTTTGGTGGGTGTGCTTATGTGCATTACTTTCTGCTCTGAATATTGAAATTCTTCTCATACTGCACACTATTCCTCTGTTTGATCTTCTGTCTTGGCTTGTGAGCTTCTTTCTTCTCTTTTGTGCTTTCAGAAACCATGGTTACTTTACTTCAAAACATTCCCAAAATAACACTATGTCTGAACCATTGTTGTGTGAAACTGAAAAGGCAGAAATAAGCCAAACAGGATTAAGCCAGGCAAATTTTTTTAGCAAATTAACATTTTCTTGGATCAATCCTTTACTCTCTTTGGGTTATACAAAGCCATTATCTCTTCAAGACATCCCTCCTATGCCCCCTGAAGACAGAGCTAACATGTGCTACCAACAGTTTGCTAGCACATGGAATTCCTTTTTAAGTGGGAATAGCTCAAACAGTTCCAAGAATTTGGTTATCTGGACCATGTCAAGAGCTTTTCTGAAAGAGAATATTTTCATAGCAATCTGTGCATTAGCCAGGACTATTTGTGCAGCAGTTTCTCCTCTTATAGTCTATGCCTTTGTAAACCATGCAAACCGTAGTGAAGACAATTTGTATGAGGGTGTTTCTATATTGGGGTGCTTGGTTCTTGTCAAAATAGTGGAATCTGTGAGTGAGAGGCAGTGGTACTTTGACTCAAGGAGGTCAGGAACAAGAATGAGATCAGCATTAATGGTGGCAGTGTATGAAAAGCTCTTGAAGCTTTCAAGCATGGCAAGGAGAAGACACTCAACTGGGGAGATTGTGAATTACATAGCAGCTGATGCCAACCGGATGGGAGAATTCATGTGGTGGTTCCATTCAGGATGGAGCCTTATATTGCAAATTTTCTTAGCCATTGGTGTCCTTTTTTGGGTTGTGGGTCTTGGTGCTTTTCCTGGTTTAGCACTTCTTCTCATATTTGGAGTCTTCAATGCTCCATATGCAAAGAAGATTAAAAATTGTCAGGTGCAAGTCCTGATTTCACAAGATCAGAGAATAAGGGCAACTTCAGAGATCTTAAACAACATCAAAATTATCAAATTACAATCATGGGAGGATAAATTTGAGAACATGATTGAGTCACTTCGTGCTACTGAATTCAAGTGGTTGGCTGAGACACAGTTCACAAAGGCTTTGGGATCTGTACTGTATTTTATTTCTCCAACTGTTATTTGTGCAGTTGTTTTATTAGGAAGCACCCTCTTTAAGACAGCTCCATTAAATGCTGGTACCATCTTCACAGTTCTTGCTACATTGAGAAGCTTGGCAGAACCTGTCAGATTCATACCTGAGGCTGTTTCTGTGGTTATCCAAGTTAAAGTCTCATTTGACAGGCTAAACACTTTTCTCCTTGATGATGAGCTAAAATCTTACCAAAAGAGGAGCATTTCAATGTCAAAATCAGATAAATGCATTGAAATAGAGGCAGCTAATTTCAGCTGGGATGAGGAATCAGTGACCCCTACTTTGAGAGACATCAATTTATGCATCAAACCTGGGCAAAAGGTAGCAGTTTGTGGGCCAGTTGGAGCTGGCAAGTCTTCTTTATTGCAAGCTATACTTGGAGAGATGCCTAAAATTTCAGGAACTGTTAATTTGCATGGAGCAGTAGCCTATGTTTCTCAAACTTCTTGGATCCAGAGTGGGACAGTTCGTGATAACATACTCTTTGGAAAACCAATGGAAAGAAATAGATATGAGAATGCCATTAAAGCATGTGCTTTGGATAAGGATATAAATAGTTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGCTTAACTTGAGTGGAGGACAGAAGCAGAGAGTTCAACTTGCCCGTGCTGTTTACAATGATGCTGATATATATCTTCTTGATGACCCTTTCAGTGCAGTAGATGCACACACTGCAGCCATTCTATTCCATGATTGTGTCATGAGTGCTCTCAGAGAGAAAACAGTCATCCTAGTGACCCACCAAGTAGAGTTTCTAACAGAAGTTGATAAAATTCTGGTTATAGAGGGTGGGCGTATTACTCAAGCAGGAAGCCATGAGGAGTTATCAGCATCTGGGGCAACCTTTGAACAACTTATAAATGCTCATAGAGATGCAATAACTGTGTTGGGTACACATAGTCAAAACCAAGAAATAGATAGAGTTAATAATGATGAACAACACCATGGATGTGATCCCCTTAACAAAATTAGTAATGGAGAAATATGTGAGACAAGAATTGAAGGGCCACAACTTACTCAAGAAGAGGAAAGAGTAAAGGGAACTGCTGGATGGAAACTGTTCCTGGATTATGTTATGATCTCCAAGGGAGAGCTTCTTATGTGTTTAAGCTTACTAGCTCTGATATGTTTTGCTGCTCTTTTGGCTGGTTCATCTTATTGGCTTGCTATAGCCAGTGAAATTCCAAGCATCAGTAGTGGCATGCTGCTTGGAGTTTACACTGCATTGGCATTCTCTAGTGCTACGTTTGTTTACCTGAGGTCTTTCTTTGTAGCTCATCTTGGATTGAAGGCTTCTAAAACCTTCTTCTCAGGTTTCACTTCTGCCATTTTCAATGCTCCTATGTCATTCTTTGACTCAACTCCTGTTGGAAGAATTTTGACTCGAGCTTCATCAGATATGGCTACTTTGGATTTTGATCTACCTTTTGCCATAGTATTTGTAATACAATGTGGAGTTGAACTTCTAACAGGAATTGGTATTATGTCTTCAGTCACATGGCAAGTTCTTATAGTTGCCATCCTAACTGCAATAGCAGGAAACTACATTAAGGGCTACTATGAAGCCACTACAAGGGAACTAGTAAGAATTAATGGAACAACAACAGCTCCAATTGTGAATTGTGCAACGGAGACATCAGCAGGAGTGGTGACAGTAAGAGCTTTCAAGATGGGGGACAGATTTTTCCAAACATTCCTACATCTAGTTGACACAGATGCTACACTTCTCTTGCATACTAAAGCTGCTCTGGAGTGGGTAGTGACAAGAGTTGAAACACTTCAAAATTTGATCCTTTTCACTGCAGCTTCTCTATTTGTGTTTCTTCCAAGGGGATCTATAGCTCCAGGGCTTGTGGGACTTTCTCTGTCTTATGCCCTGTCATTAACAAGATCCCAGATGTATTTTACTAAGTGGTCTTGTAACTTATCAAACTTCAGCATCTCTGTTGAAAGAATCAAGCAATTCATGCAGATACCACAAGAGCCTCCAAAAATATTGGAGGATAAAAGGCCACCATCTTCATGGCCTTCCAAGGGAAGGATAGAGCTTCAAGCTTTGAAGGTTAGATATCGTCCAAATGCTCCTTTAGTTCTGAATGGAATCACTTGTACCTTCAAAGAAGGGACTAGAGTAGGAGTTGTAGGAAGGACTGGGAGTGGAAAAACAACACTTTTAAGTGCATTGTTTCGTTTGGTAGAGCCTACAAGCGGTGAAATTCTTATAGATGGACTTAACATATGCTCAATAGGTCTAAAGGATTTAAGAATGAATCTAAGCATCATCCCTCAAGAACCAATTCTTTTCAAGGGTAGTGTCCGAACCAACTTGGATCCTCTGGACCAATTCTCTGATGATGAGATATGGAAGGTTTTAGAGATGTGTCAACTCAAGGAGGCTATTTCTGGACTACCATATCTTTTGGACTCATCAGTGAGTAATGAAGGTGAAAATTGGAGTGTGGGTCAACGCCAATTATTTTGCCTTGGAAGAGTCCTTCTAAAAAGGAATAGAATTCTAGTTTTGGATGAAGCAACGGCTTCCATTGATTCTGCAACAGATGCCATTTTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTTCTTTCTTTTGTAAGTGATGAAGGTGGAAATTGGAGCTTGAGACAGCGACAACTATTTTGCCTTGCAAGAGTACTACTTAAGAGGAACAGAATTCTTGTTCTAGATGAAACTACTGCATCCATTGACACTGCAACAGATGCCATTCTACAACGAGTAATTAAAAAAGAATTTGCAAAATGCACAGTTATAACTATGGCACATAGAATTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTGTCTTATGGGGATTTCTCATGGTCTTGTCTGGGAGATTTTGACTTATATTCTTTCTGCTCTCAAAGAAGCATCATAGACTTTGTAAATCTACTTTTTGTCTGTGCCTTCTACACGTCTTTGCTTATCACTTTGATCAGAAGATGTTCTGAAAGTGGTAGCCACAGAAAGAACTGGATTTTCCCAGTTGTCTCAATCTGCTGTGCTCTTATTAGCATTGCATATTTTAGCAATGGCCTTTGGAATCTCATAGCCAAAACTAGTAATCTTATTAGTATTGTGAGAGCTTTTGTTTGGATTTCTTATGCAGTTTCTTTGCTTGTTCAGAGATACAAATGGTTAAAAATTCTGAACTTTATGTGGTGGGCATCTTCCTGTGTATTGTTTTCAGCTCTCAACATTGAAACTCTGTTCAAAGAGCACGCAGTTGAAGTTTTTGATATGGTACAATGGCTTGTACACTTCTTACTTCTCTTCTGTGCCTTCCAAAATCTTGGTTATTTTGTCATTTCCCAAAGTATTCAAGATACTACCAATTTTTCTGAGCCACTATTAGCTCAGAAAATTGAAACTAAACAAACACAACTAGACCATGCTACTCTTCTCAGTAAGTTGACTTTCTCTTGGGTTAATTCTTTACTCAGTAAGGGTTACTCAAAGCCACTAGCTCTTGAAGACATCCCTTCTCTTCTTTCTGAAGATGAAGCACACTTGGCCTACCAAAACTTCTTGCATGCATGGGAATCCCTTGTCAGAGAGAGGAGCAAGAACAATACCAAAAACTTGGTTCTTTGGGCTGTGGTTAGAACTTACTTCAAAGAAAACATATTAATAGCTTTTTACGCATTACTAAGAACTATTTCTGTTGTTGTTTCTCCTCTAATACTTTATGCTTTTGTAAACTACTCAAATAGAACTGAGGCAAATCTCAAAGAAGGTTTTTCCATACTAGGTTTTCTGATTCTCACCAAAGTGTTTGAGTCTTTGCCCCAAAGACACTATTGTTTTGGTTCAAGGAGGTCAGGGATGAAAATGAGATCAGCTCTAATGGTAGCAGTTTATGAAAAACAGCTAAAGCTTTCAAGCTCAGCGAGGAGAAGACACTCAACTGGTGAAATTGTGAATTACATTGCAGTTGATGCATATCGAATGGGGGAATTTCCATGGTGGTTTCATGTAACATGGACTTCAGCATTGCAACTTGTTCTGTCTATTAGTCTCCTCTTTTATGTTGTGGGCTTTGGAGCTCTTCCTGGTTTAGTCCCTCTTCTCATCTGTGGACTTCTCAATATCCCATTTGCAAAGATCCTACAAAATTGCCACTCACAGTTTATGATTGCACAGGATGTGCGTCTTAGATCAACTTCAGAAATTCTAAACAGCATGAAAATCATCAAGTTACAATCCTGGGAGGAAAAATTCAAGAATTTAGTTTTGTCCCTACGTGCTGAAGAGTTCATATGGTTATCTAAGGCACAAATCATGAAAGCTTATATGTCATGTATTTATTGGATGTCTCCTACCATTGTTCCTTCTGTTATTTTCCTCGGCTGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACCTTGAGGATGGTTGCAGAACCTGTTAGAATGATCCCAGAGGCTTTATCTATTATGATACAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAAATAGTGATGATAATGGAAGAAACATAAAGCAATGTTCAGTTAATGCTGTGGAAATTCAAGCTGGCAACTTTATTTGGGATCATGAATCAGTGTCCCCAACTTTAACAAATGTGAATTTGGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTCTGTATGCCATGATTGGAGACATTCCTAAGATTTCCGGAAGGGTGAGTCATTGA 6477 0.3901 MNICDLDTLNGMAGGLSWTCGGEFNLASFCVQRSIIDGINLLFFCVFFLFLLLGLGGKHHSSDISRKDLVLVVASICCFLTCIFYFGNGLYNIIDHNNNLTWVAYAIRGLVWISLAVSLLNQRSKRIICLNSVWWVCLCALLSALNIEILLILHTIPLFDLLSWLVSFFLLFCAFRNHGYFTSKHSQNNTMSEPLLCETEKAEISQTGLSQANFFSKLTFSWINPLLSLGYTKPLSLQDIPPMPPEDRANMCYQQFASTWNSFLSGNSSNSSKNLVIWTMSRAFLKENIFIAICALARTICAAVSPLIVYAFVNHANRSEDNLYEGVSILGCLVLVKIVESVSERQWYFDSRRSGTRMRSALMVAVYEKLLKLSSMARRRHSTGEIVNYIAADANRMGEFMWWFHSGWSLILQIFLAIGVLFWVVGLGAFPGLALLLIFGVFNAPYAKKIKNCQVQVLISQDQRIRATSEILNNIKIIKLQSWEDKFENMIESLRATEFKWLAETQFTKALGSVLYFISPTVICAVVLLGSTLFKTAPLNAGTIFTVLATLRSLAEPVRFIPEAVSVVIQVKVSFDRLNTFLLDDELKSYQKRSISMSKSDKCIEIEAANFSWDEESVTPTLRDINLCIKPGQKVAVCGPVGAGKSSLLQAILGEMPKISGTVNLHGAVAYVSQTSWIQSGTVRDNILFGKPMERNRYENAIKACALDKDINSFSHGDLTEIGQRGLNLSGGQKQRVQLARAVYNDADIYLLDDPFSAVDAHTAAILFHDCVMSALREKTVILVTHQVEFLTEVDKILVIEGGRITQAGSHEELSASGATFEQLINAHRDAITVLGTHSQNQEIDRVNNDEQHHGCDPLNKISNGEICETRIEGPQLTQEEERVKGTAGWKLFLDYVMISKGELLMCLSLLALICFAALLAGSSYWLAIASEIPSISSGMLLGVYTALAFSSATFVYLRSFFVAHLGLKASKTFFSGFTSAIFNAPMSFFDSTPVGRILTRASSDMATLDFDLPFAIVFVIQCGVELLTGIGIMSSVTWQVLIVAILTAIAGNYIKGYYEATTRELVRINGTTTAPIVNCATETSAGVVTVRAFKMGDRFFQTFLHLVDTDATLLLHTKAALEWVVTRVETLQNLILFTAASLFVFLPRGSIAPGLVGLSLSYALSLTRSQMYFTKWSCNLSNFSISVERIKQFMQIPQEPPKILEDKRPPSSWPSKGRIELQALKVRYRPNAPLVLNGITCTFKEGTRVGVVGRTGSGKTTLLSALFRLVEPTSGEILIDGLNICSIGLKDLRMNLSIIPQEPILFKGSVRTNLDPLDQFSDDEIWKVLEMCQLKEAISGLPYLLDSSVSNEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSFVSDEGGNWSLRQRQLFCLARVLLKRNRILVLDETTASIDTATDAILQRVIKKEFAKCTVITMAHRIPTVIDSDMVMVLSYGDFSWSCLGDFDLYSFCSQRSIIDFVNLLFVCAFYTSLLITLIRRCSESGSHRKNWIFPVVSICCALISIAYFSNGLWNLIAKTSNLISIVRAFVWISYAVSLLVQRYKWLKILNFMWWASSCVLFSALNIETLFKEHAVEVFDMVQWLVHFLLLFCAFQNLGYFVISQSIQDTTNFSEPLLAQKIETKQTQLDHATLLSKLTFSWVNSLLSKGYSKPLALEDIPSLLSEDEAHLAYQNFLHAWESLVRERSKNNTKNLVLWAVVRTYFKENILIAFYALLRTISVVVSPLILYAFVNYSNRTEANLKEGFSILGFLILTKVFESLPQRHYCFGSRRSGMKMRSALMVAVYEKQLKLSSSARRRHSTGEIVNYIAVDAYRMGEFPWWFHVTWTSALQLVLSISLLFYVVGFGALPGLVPLLICGLLNIPFAKILQNCHSQFMIAQDVRLRSTSEILNSMKIIKLQSWEEKFKNLVLSLRAEEFIWLSKAQIMKAYMSCIYWMSPTIVPSVIFLGCALFNSAPLNAETIFTVLATLRMVAEPVRMIPEALSIMIQVKVSFDRLNTFLLDEELNSDDNGRNIKQCSVNAVEIQAGNFIWDHESVSPTLTNVNLEIKWGQKIAVCGPVGAGKSSLLYAMIGDIPKISGRVSH. 2159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11577 2158 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1222 1452 IPR003439 GO:0005524
Seca3g11577 2158 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1782 2063 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11577 2158 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 908 1170 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11577 2158 CDD ABC_6TM_ABCC_D2 914 1195 IPR044726 GO:0140359
Seca3g11577 2158 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1703 2157 - -
Seca3g11577 2158 Gene3D - 598 832 IPR027417 -
Seca3g11577 2158 Pfam ABC transporter 1237 1385 IPR003439 GO:0005524
Seca3g11577 2158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1210 1428 IPR027417 -
Seca3g11577 2158 SUPERFAMILY ABC transporter transmembrane region 904 1202 IPR036640 GO:0005524|GO:0016020
Seca3g11577 2158 Pfam ABC transporter 2115 2156 IPR003439 GO:0005524
Seca3g11577 2158 SUPERFAMILY ABC transporter transmembrane region 277 584 IPR036640 GO:0005524|GO:0016020
Seca3g11577 2158 Pfam ABC transporter 622 756 IPR003439 GO:0005524
Seca3g11577 2158 SUPERFAMILY ABC transporter transmembrane region 1770 2077 IPR036640 GO:0005524|GO:0016020
Seca3g11577 2158 Gene3D - 2077 2158 IPR027417 -
Seca3g11577 2158 Gene3D ABC transporter type 1, transmembrane domain 1757 2076 IPR036640 GO:0005524|GO:0016020
Seca3g11577 2158 Gene3D ABC transporter type 1, transmembrane domain 870 1201 IPR036640 GO:0005524|GO:0016020
Seca3g11577 2158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 827 IPR027417 -
Seca3g11577 2158 Pfam ABC transporter transmembrane region 1784 2043 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11577 2158 Pfam ABC transporter transmembrane region 289 550 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11577 2158 Pfam ABC transporter transmembrane region 937 1167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11577 2158 CDD ABC_6TM_ABCC_D1 1783 2071 IPR044746 GO:0140359
Seca3g11577 2158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1429 1511 IPR027417 -
Seca3g11577 2158 FunFam Multidrug resistance-associated protein member 4 1204 1430 - -
Seca3g11577 2158 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 606 827 IPR003439 GO:0005524
Seca3g11577 2158 SMART AAA_5 631 804 IPR003593 GO:0016887
Seca3g11577 2158 SMART AAA_5 1246 1436 IPR003593 GO:0016887
Seca3g11577 2158 CDD ABC_6TM_ABCC_D1 290 578 IPR044746 GO:0140359
Seca3g11577 2158 CDD ABCC_MRP_domain2 1218 1428 - -
Seca3g11577 2158 FunFam Multidrug resistance protein associated1 583 847 - -
Seca3g11577 2158 ProSitePatterns ABC transporters family signature. 729 743 IPR017871 GO:0005524|GO:0016887
Seca3g11577 2158 FunFam ABC transporter C family member 10 1765 2079 - -
Seca3g11577 2158 CDD ABCC_MRP_domain1 604 804 - -
Seca3g11577 2158 Gene3D - 1204 1429 IPR027417 -
Seca3g11577 2158 Gene3D - 1430 1516 IPR027417 -
Seca3g11577 2158 Gene3D ABC transporter type 1, transmembrane domain 276 587 IPR036640 GO:0005524|GO:0016020
Seca3g11577 2158 FunFam ABC transporter C family member 10 272 586 - -
Seca3g11577 2158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2042 2156 IPR027417 -
Seca3g11577 2158 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 289 570 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11577 2158 FunFam ABC transporter C family member 5 869 1201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11577 Seca-Chr3 264125786 264136880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11577 347 833 Calmodulin-binding Proteins AT2G36910 23.764 3.42e-25 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11577 - - cave:132187277 1842.4