Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11573 ATGAATTTTGCAGCTGAGACGTCACTTGGAGTGGTTACTGTAAGAACATTCAACATGGTAGACAAATTTTTCAAACACTACCTAAAGCTTGTGGACACAGATGCAACATTGTTCTTTCATTCTAATGTGGCAATGGAATGGTTAGTTTTAAGGATTGAAGTACTTCAAAATTTGACAGTCTTCACTGCAGCTTTATTACTTATCCTACTTCCTAAGGGATACGTGTCTTCAGTTGAAAGAATCAAGCAATTTATTCACATACCAGTGGAGCCTCCTGCCATTGTGGAGGATAACAGACCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCAAGAATTAGAGATTAGATATCGTCCAAATGCTCCATTGGTCCTTAAGGGTATCACTTGTACATTTAAAGAAGGGAATAGAGTAGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGTACACTTATAGGTGCTTTGTTTCGCTTAGTTGAGCCTTCAGGAGGTTCGATTCTTATTGATGGGATTAACATTTGCTCAATGGGGTTGAAGGAATTGAGAATGAAGCTAAGCATTATTCCTCAAGAACCAACTCTTTTCAAAGGCAGCATTAGGACAAACCTGGACCCTCTATGCAGATGA 633 0.3965 MNFAAETSLGVVTVRTFNMVDKFFKHYLKLVDTDATLFFHSNVAMEWLVLRIEVLQNLTVFTAALLLILLPKGYVSSVERIKQFIHIPVEPPAIVEDNRPPSSWPSKGRIDLQELEIRYRPNAPLVLKGITCTFKEGNRVGVVGRTGSGKSTLIGALFRLVEPSGGSILIDGINICSMGLKELRMKLSIIPQEPTLFKGSIRTNLDPLCR. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11573 210 SUPERFAMILY ABC transporter transmembrane region 2 92 IPR036640 GO:0005524|GO:0016020
Seca3g11573 210 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 71 - -
Seca3g11573 210 Gene3D - 93 210 IPR027417 -
Seca3g11573 210 FunFam ATP binding cassette subfamily C member 5 93 202 - -
Seca3g11573 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 206 IPR027417 -
Seca3g11573 210 Gene3D ABC transporter type 1, transmembrane domain 1 90 IPR036640 GO:0005524|GO:0016020
Seca3g11573 210 Pfam ABC transporter 127 203 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11573 Seca-Chr3 264082007 264083019 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11573 107 205 Calmodulin-binding Proteins AT2G36910 33.663 1.39e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11573 - - var:108320460 351.673