Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11572 ATGAAAATGAGATCAGCTCTAATGGTAGCAGTCTATGAAAAACAGCTAAAGCTTTCTAACTCAGCAAGGAGAAGGCACTCAACTGGTGAAATTGTGAATTACATTGCAGTTGATGCATATCGAATGGGGGAATTTCCATGGTGGTTTCATGTAACATGGACTTCAGCATTGCAACTTGTTCTGTCTATTAGTCTCCTCTTTTATGTTGTGGGTTTTGGAGCTCTTCCTGGTTTAGTCCCTCTTCTCATATGTGGACTTCTCAATATCCCATTTGCAAAGATCCTACAAAATTGTCACTCACAATTTATGATTGCACGGGATGTGCGTCTTAGATCAACTTCAGAAATTCTAAACAGCATGAAAATCATCAAGTTACAATCCTGGGAGGAAAAATTCAAGAATTTAGTTTTGTCCCTACGTGCTGAAGAGTTCATATGGTTGTCTAAGGCACAAATCATGAAAGCTTATATGTCATGTCTTTATTGGATGTCTCCTACCATTGTTCCTTCTGTTATTTTCCTCGGATGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGAAACCATTTTCACAGTTATTGCAACGTTGAGGATGGTTGCAGAACCTGTTAGAAGGATCCCAGAAGCTCTATCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCTTTTTGCTTGATGAAGAGCTAACTAGTGATGATAATGGAAGAAGTATAAAGCAACGTTCAGTTAATGCTGTGGAAATTCATGCTGGCAACTTCATCTGGGATCATGATTCAGTGTCCCCAACTTTAACAAATGTGAATTTGGAAATCAAATGGGGGCAGAAAATAGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTCTTCTGTATGCCATGCTTGGAGACATTCCTAAAATTTCAGGAACTGTTAATGTTAGTGGAAGCCTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGGAAGCCAATGGACAAAACAAGATATGAGAATGCCATTAGAGTTTGTGCCTTGGATAAGGATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAATGATGCTGACATCTATTTCCTTGATGACCCTTTCAGTGCAGTTGATGCGCACACTGCTGCTATTCTTTTCAATGACTGTGTCATGAGAGCTTTAAAAGATAAAACAGTCATTCTAGTAACTCATCAAGTAGAGTTTCTTTCTGAAGTTGATACAGTCCTGGTAATGGAGGGAGGAAAGGTTACTCAATCAGGTAAGTATGAGGATCTCCTGACAGCTGGCACAACCTTTGAACAACTTGTGAGAGCCCACAAAGAAGTATTAACAGAACTGGATCAAAATAATGAAAGTTCTGAAATTGATATTATGGCACATCTAGAAGAGTCCCATGGTTTTTATGTCACTAAAAATCAAAATGAGGGGGAGATTTCTACCAAGGGACAGCTTACACAAGAAGAAGAAAAAGAGATTGGTGATATTGGCTGGAAGCCATTCTGGGATTATATTTCTTTTCCTAGGGGATCATCCATGTTGTGTTTGATCTTGTTAGTTCAATCTGCTTTTGTTTCTTTGCAGACTGCATCATCTTTTTGGCTTGCTTTAGCCATTGAAATTCCAAAGTTAACTAGTGGCACCTTGATTGGGGTTTATTCACTAATTTCATTTATTAGTGCTGCGTTTGTATATCTAAGATCTCTCTTGGTTGCACATCTTGGACTAAAAGCTTCTTCATCCATATTCTCAAGTTTCACTACGGCTATCTTCAATGCTCCTATGCTATTCTTTGACTCAACACCTGTAGGGAGGATTTTAACCCGAGCTTCTTCAGATTTGAGTATTTTGGTCCTTGATGTACCTTATTCTATCACTTTTGTAGTATTTGTAGCAATTGAAATTCTGGTTACAATTTGTGCCATGGTTTCCATCACATGGCAAGTTCTCATTGTAGCTATTCCAGCCATGGTCGCATCGAAATATATTCAGGGATATTATCAAGCCTCTGCAAGGTAA 2118 0.3881 MKMRSALMVAVYEKQLKLSNSARRRHSTGEIVNYIAVDAYRMGEFPWWFHVTWTSALQLVLSISLLFYVVGFGALPGLVPLLICGLLNIPFAKILQNCHSQFMIARDVRLRSTSEILNSMKIIKLQSWEEKFKNLVLSLRAEEFIWLSKAQIMKAYMSCLYWMSPTIVPSVIFLGCALFNSAPLNAETIFTVIATLRMVAEPVRRIPEALSIMIQVKVSFDRLNTFLLDEELTSDDNGRSIKQRSVNAVEIHAGNFIWDHDSVSPTLTNVNLEIKWGQKIAVCGPVGAGKSSLLYAMLGDIPKISGTVNVSGSLAYVSQTSWIQSGTVRDNILFGKPMDKTRYENAIRVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYFLDDPFSAVDAHTAAILFNDCVMRALKDKTVILVTHQVEFLSEVDTVLVMEGGKVTQSGKYEDLLTAGTTFEQLVRAHKEVLTELDQNNESSEIDIMAHLEESHGFYVTKNQNEGEISTKGQLTQEEEKEIGDIGWKPFWDYISFPRGSSMLCLILLVQSAFVSLQTASSFWLALAIEIPKLTSGTLIGVYSLISFISAAFVYLRSLLVAHLGLKASSSIFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILVLDVPYSITFVVFVAIEILVTICAMVSITWQVLIVAIPAMVASKYIQGYYQASAR. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11572 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 251 472 IPR003439 GO:0005524
Seca3g11572 705 ProSitePatterns ABC transporters family signature. 374 388 IPR017871 GO:0005524|GO:0016887
Seca3g11572 705 SMART AAA_5 276 449 IPR003593 GO:0016887
Seca3g11572 705 CDD ABC_6TM_ABCC_D1 1 223 IPR044746 GO:0140359
Seca3g11572 705 SUPERFAMILY ABC transporter transmembrane region 2 229 IPR036640 GO:0005524|GO:0016020
Seca3g11572 705 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 549 705 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11572 705 Pfam ABC transporter 267 401 IPR003439 GO:0005524
Seca3g11572 705 FunFam Multidrug resistance protein associated1 228 491 - -
Seca3g11572 705 CDD ABCC_MRP_domain1 249 449 - -
Seca3g11572 705 SUPERFAMILY ABC transporter transmembrane region 532 704 IPR036640 GO:0005524|GO:0016020
Seca3g11572 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 471 IPR027417 -
Seca3g11572 705 FunFam ABC transporter C family member 10 1 231 - -
Seca3g11572 705 Gene3D ABC transporter type 1, transmembrane domain 1 237 IPR036640 GO:0005524|GO:0016020
Seca3g11572 705 Pfam ABC transporter transmembrane region 548 700 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11572 705 Pfam ABC transporter transmembrane region 1 195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11572 705 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 215 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g11572 705 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 705 - -
Seca3g11572 705 Gene3D - 247 479 IPR027417 -
Seca3g11572 705 Gene3D ABC transporter type 1, transmembrane domain 483 705 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11572 Seca-Chr3 264079340 264081970 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11572 227 478 Calmodulin-binding Proteins AT2G36910 27.372 8.69e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11572 - - gmx:100784827 1142.1