Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11570 ATGAGTCGAGAGCAACAGAAGCGGGGGAAGCAAGAAAAAGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCCGTTAAGGCATCAAGGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTCACTCATGTTGTTCAACCTGGAGATTGCATAACTCTGCTAGTGGTTGTGCCTTCACAAACTTCAGGCAGAAGATTATGGGGTTTTCCAAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAGTTTCAGAGCAGAAGAGTGATATCACTGATTCTTGCTCTCAGATGATCCTTCAGCTCCATGATGTCTATGATCCAAACAAGATAAATGTCAGGATTAAAATTGTTTCCGGATCACCTTGTGGAGCAGTGGCTGCAGAAGCCAAGAAAGCACAAGCCAATTGGGTCGTATTAGACAAACAGCTCAAACATGAGGAAAAGCGATGCATGGAAGAGTTGCAGTGTAACATTGTGGTTATGAAGCGTTCTCAACCAAAAGTGCTACGCTTGAATTTGATTGGACCACAAAAGAAGGATGTTGAAGAAGCAAGTCCATCATCCCCTTCTGAGAAAGATGATGTGCCTGAAAAGCAAACCAAAAAGAAGATTGATTCTTTGAATTCTATCAAAGGACCAACTGTCACTCCAACTAGCAGCCCTGAGCTAGGGACACCATTCACTACAACTGAAGCTGGTACTTCATCAGCTTCAAGCTCTGATCCAGGAACTTCACCATTCTTTATCTCAGAGATGAATGGTGAGTCAAAAAAAGAGGAAACCATTCAGGAAAATCATGAACTTGGTGATACTAATTCAGACACAGAAAGTGAAAGTCTTTCAACATCTTCAGCAAGCTTGAGATTCCAGCCTTGGATCACAGAATTGCTTTTACATCAACAATCATCTCAACGCAGTGAAGAAAGGTCTGAGACATATCATGGTATGCCTCAAGCATCTACAACCAGAGCTTTGTTTGAAAAGTTTTCTAGGCTTGATAGAGGAGCTGGAATTGAAGTCTCAACTTATAGAAGTGACTCAGATTTCAGTGGTAATTTAAGAGAAGCAATAGCATTATCAGGAAATGCCCCACCTGGTCCCCCTCCATTGTGTTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCACCAAGGTGGTTCAGCTATGCTGAGCTAGAACTTGCTACTGGTGGATTTTCACAAGCCAACTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGGTGATCTTGAGTTTTGCTCTGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGCGACAACGGGAGCCATTAGAGTGGTGTGCAAGGCAAAAAATTGCTGTTGGAGCTGCTCGTGGGTTAAGATATCTTCATGAAGAGTGCAGAGTGGGTTGTATTATACACCGTGACATGAGGCCAAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGTGTGGAAACTAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATCACTGAAAAAGCTGATGTTTATTCATTTGGGGTGGTATTAGTGGAGCTTGTTACAGGAAGAAAAGCTGTGGATCTCACTCGGCCAAAAGGACAGCAATGTCTTACTGAGTGGGCACGGCCTCTATTAGAAGAATATGCTATTGAGGAACTAATTGACCCTAGGTTGGGTGGCCACTATTTAGAACATGAGGTCTATTGCATGCTCCATGCTGCATCATTATGCATACGCAGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTCCGAATACTAGAGGGTGACATGGTGATGGACACAAATTACATTTCAACTCCAGGTTATGATGTGGGAAACAGGAGTGGTCGAATTTGGTCAGAGCCACTGCAGAGGCAGCACCATTACAGTGGTCCCCTCTTAGAAGAGTCACTTGAGTCATTCAGTGGAAAGCTATCCCTTGACAAGTACAAGCCTTCCTATTGGGATAGGGATAGGGACAAGGCTAGGAGGGCTTCATGTGATGATGACATTTAA 2259 0.436 MSREQQKRGKQEKGSDGAEKVIVAVKASREIPKTALVWSLTHVVQPGDCITLLVVVPSQTSGRRLWGFPRFAGDCASGIKKYPPGTVSEQKSDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPQKKDVEEASPSSPSEKDDVPEKQTKKKIDSLNSIKGPTVTPTSSPELGTPFTTTEAGTSSASSSDPGTSPFFISEMNGESKKEETIQENHELGDTNSDTESESLSTSSASLRFQPWITELLLHQQSSQRSEERSETYHGMPQASTTRALFEKFSRLDRGAGIEVSTYRSDSDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWCARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIEELIDPRLGGHYLEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDMVMDTNYISTPGYDVGNRSGRIWSEPLQRQHHYSGPLLEESLESFSGKLSLDKYKPSYWDRDRDKARRASCDDDI. 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11570 752 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 480 683 - -
Seca3g11570 752 MobiDBLite consensus disorder prediction 188 209 - -
Seca3g11570 752 PANTHER OS01G0750732 PROTEIN 157 682 - -
Seca3g11570 752 MobiDBLite consensus disorder prediction 257 277 - -
Seca3g11570 752 FunFam Dual-specific kinase DSK1-like 12 166 - -
Seca3g11570 752 MobiDBLite consensus disorder prediction 304 323 - -
Seca3g11570 752 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Seca3g11570 752 Pfam Protein tyrosine and serine/threonine kinase 408 673 IPR001245 GO:0004672|GO:0006468
Seca3g11570 752 MobiDBLite consensus disorder prediction 210 255 - -
Seca3g11570 752 CDD STKc_IRAK 410 676 - -
Seca3g11570 752 Gene3D Transferase(Phosphotransferase) domain 1 480 686 - -
Seca3g11570 752 SUPERFAMILY Protein kinase-like (PK-like) 388 683 IPR011009 -
Seca3g11570 752 MobiDBLite consensus disorder prediction 182 287 - -
Seca3g11570 752 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Seca3g11570 752 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11570 752 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11570 Seca-Chr3 264008121 264012341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11570 345 670 Trihelix Transcription Factor Family AT1G68690 51.360 5.94e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca3g11570 PK_Tyr_Ser-Thr 2.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11570 - - gmx:100816340 1379.77