Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11567 ATGATAATTGGTAATGGTAAATTGATACGAAATCCCTTAAAGGCAATGGAGGAAACGCCTAAGCTTCTCCATGGAACAATTGAAGCTACTATCTTCCATGCCTCACCTTACTCATCTTTTTTTCCCTTCAATTTGAGCTCAATATTTCAGTGCATATGTTCAACTGGAGAGCCTGCTTATGTGACCATCAAGATAGACAACAACAAGGTTGCAAAAACAAGCCAAGAAACCAATTGTATCTGGAACCAAACCTTTCAGATTCATTGTGCTCATCCACCTGATTCAACTATCACCATTACACTGAAAACATCATGTTCCATATTGGGGAAATTCCATATACAGGCCCATCAGCTATTGAAGGAACCAAATTTGATCAATGGCTTCTTCCCTCTCCTCATGGAAAATGGAAAACCACACCCAAAACTTAAATTAAAATTTTTATTATGGTTCAAGCCAGCAGAATTGGCACCTAGTTGGGCAGAGGTACTAACCAATGGGGAATTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCCAATTGTCATGTCAAACTTTATCATGATGCTCATCATTCTCCTGCTTTTCAACCTCCTTTTGATTTATGTGGAGCTCCAAAAAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGCACATAGTTTATATTGCTGGCTGGTCCTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCATACAGAAATCCCACATGCTAGAGGAATAAAGCTGGGTGAGTTACTTAAGAAGAAGGCAGAGGAAGGAGTTGCTGTGAGAGTTATGCTATGGGATGATGAAACATCTTTGCCCTTTATTAAGAACAAAGGTGTAATGAACAACCATGATGAGGATGCTTTTGCTTATTTCAACCACACAAAAGTAATATGCAGGAAGTGTCCAAGGTTACACCATAAGTTCCCCACACTATTTGCTCACCATCAAAAGACTATAACTGTGGACACTGTTGTACACAAATCTGTTAGTGACAGAGAACTTATGAGCTTTGTGGGTGGGTTAGATTTGTGTGATGGCCGGTATGATACAGAACAACATTCATTGTTTCAAACACTGATTAAGGAATCTCATTGTTATGACTTTTACCAAACAAACATTGGAGGAGCTAACCTCAACAAAGGAGGGCCAAGAATGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTAGTCCTTGCTAGTACCTTGCTGAATCTTATGCCTCCTACAAGCCCAAGCACTTCCATAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTTTCTGTTGGCAAGTTGTTTGGCAAGTTCACTGTGGATGTGGAGAGAAGCATCCATGAAGCATATGTTGAAGCAATAAGGCGTGCTGAAAGGTTTATCTACATTGAAAACCAATATTTCATTGGGGGGTGCCATTTGTGGGAGAAAGATAAGCATTGTGGCTGCACAAATCTAATTCCCATTGAAATTGCACTCAAGGTGGTTAATAAGATCAAAGCAAAGGAGAGGTTTGCAGTGTACATAGTGATACCAATGTGGCCAGAAGGAGTGCCTGATAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGGAGAACCAGGACACCCAAGAGACTACTTGAATTTCTTCTGTCTTGCAAATAGGGAGTACAAGGGAAAGGGGGAGTATCTTCCACTACATTCTCCTCATCCTGAAACACAATATTGGAATGCCCAAAAAAATAGGAGATTCATGGTCTATGTTCACTCCAAGCTCATGATAGTGGACGACCTATACATAATAATAGGATCAGCTAATGTGAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATTGCCTTAGGATGCTACCAGTCTCAATTTAAAACCATATCAAAAAGTTTAAAACCATGTGTGCTTGGTGATATTCATGCATACAGAATGTCACTATGGTATGAGCACACCAATAGTGCTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGAAATGTGTGCAGAAAATGCGCTCAATAGGAGACCAAATGTGGGGAATCTACAGCAGTGCAGAAATTGTGGACATGGAAGGTGTGCATCTTGTTACTTACCCTGTGAAGGTAACACAAGAAGGGTATGTGAAGGCCCTCAATAATGGAATTCATTTTCCTGATACAAATTCACTCTCCATGTTCGTCTTCTCTCTCCTTCTTCCATTGCAACTATTTTTTATTTTAGATTTCAGATTTCTGATTTCTCGCATCGCAGTTTCTGTTAATGAAATTGAGGCGTTGCACGACATGTTCAAGAAGTTGAGTAGTTCAATCATTGACGATGGCCTCATCCACAAGGAAGAGCTCACGTTGGCACTATTGAAGACCGCATCTGGCAAGAATCTTTTCCTTGACAGGGTGTTTGATCTCTTTGATGAAAAGAAAAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCACTGTCTTTCATCCTTATACCCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTACGACTTGAGACAGACTGGATATATTGAGCGAGAAGAAGTTAGACAAATGGTGGTTGCAATTATGGCAGAGTGTGGCATGGATCTGGAAGATGAAGTCCCTGAAGCCATTATTGATAAGACATTTCAAGATGCTGATGCTGATAAGGATGATAAGATAAGTAAAGAAGAATGGAAGGAGTTTGTCATTCGGCACCCAACACTCTTGAAGCACCTGACTCTTCCTTATTTGAAGGACATCACCACAGTATTTACCAGTTTCATTTTCAACACCCAAGTTGATGATTCCCACTGGCAACTCAATAGCCATGATAAACCGTAA 2979 0.4055 MIIGNGKLIRNPLKAMEETPKLLHGTIEATIFHASPYSSFFPFNLSSIFQCICSTGEPAYVTIKIDNNKVAKTSQETNCIWNQTFQIHCAHPPDSTITITLKTSCSILGKFHIQAHQLLKEPNLINGFFPLLMENGKPHPKLKLKFLLWFKPAELAPSWAEVLTNGEFQGLRDATFPQRSNCHVKLYHDAHHSPAFQPPFDLCGAPKKLWEDVYKAIEGAKHIVYIAGWSFNPKMVLVRDPHTEIPHARGIKLGELLKKKAEEGVAVRVMLWDDETSLPFIKNKGVMNNHDEDAFAYFNHTKVICRKCPRLHHKFPTLFAHHQKTITVDTVVHKSVSDRELMSFVGGLDLCDGRYDTEQHSLFQTLIKESHCYDFYQTNIGGANLNKGGPRMPWHDAHACVTGEAAWDVLTNFEQRWTKQCDPSFLVLASTLLNLMPPTSPSTSIERNWKVQVYRSIDHVSVGKLFGKFTVDVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDKHCGCTNLIPIEIALKVVNKIKAKERFAVYIVIPMWPEGVPDSEPVQDILHWTRETMAMMYRLIGEAIQESGEPGHPRDYLNFFCLANREYKGKGEYLPLHSPHPETQYWNAQKNRRFMVYVHSKLMIVDDLYIIIGSANVNQRSMDGQRDTEIALGCYQSQFKTISKSLKPCVLGDIHAYRMSLWYEHTNSAEELFLEPESLKCVQKMRSIGDQMWGIYSSAEIVDMEGVHLVTYPVKVTQEGYVKALNNGIHFPDTNSLSMFVFSLLLPLQLFFILDFRFLISRIAVSVNEIEALHDMFKKLSSSIIDDGLIHKEELTLALLKTASGKNLFLDRVFDLFDEKKNGVIEFEEFVHALTVFHPYTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAIMAECGMDLEDEVPEAIIDKTFQDADADKDDKISKEEWKEFVIRHPTLLKHLTLPYLKDITTVFTSFIFNTQVDDSHWQLNSHDKP. 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11567 992 Gene3D Endonuclease Chain A 197 432 - -
Seca3g11567 992 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 21 145 IPR035892 -
Seca3g11567 992 ProSiteProfiles EF-hand calcium-binding domain profile. 838 873 IPR002048 GO:0005509
Seca3g11567 992 SMART efh_1 923 951 IPR002048 GO:0005509
Seca3g11567 992 SMART efh_1 842 870 IPR002048 GO:0005509
Seca3g11567 992 SMART efh_1 879 907 IPR002048 GO:0005509
Seca3g11567 992 Gene3D C2 domain 52 192 IPR035892 -
Seca3g11567 992 SUPERFAMILY EF-hand 792 973 IPR011992 -
Seca3g11567 992 Gene3D Endonuclease Chain A 442 678 - -
Seca3g11567 992 ProSiteProfiles EF-hand calcium-binding domain profile. 919 954 IPR002048 GO:0005509
Seca3g11567 992 PANTHER PHOSPHOLIPASE D 22 766 IPR015679 -
Seca3g11567 992 Pfam EF-hand domain pair 878 947 IPR002048 GO:0005509
Seca3g11567 992 SUPERFAMILY Phospholipase D/nuclease 164 427 - -
Seca3g11567 992 SUPERFAMILY Phospholipase D/nuclease 450 715 - -
Seca3g11567 992 Pfam Phospholipase D C terminal 703 769 IPR024632 -
Seca3g11567 992 Gene3D - 791 982 - -
Seca3g11567 992 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 317 354 IPR001736 GO:0003824
Seca3g11567 992 PRINTS Recoverin family signature 846 867 - -
Seca3g11567 992 PRINTS Recoverin family signature 939 959 - -
Seca3g11567 992 PRINTS Recoverin family signature 893 911 - -
Seca3g11567 992 SMART pld_4 317 354 IPR001736 GO:0003824
Seca3g11567 992 SMART pld_4 627 654 IPR001736 GO:0003824
Seca3g11567 992 CDD PLDc_pPLD_like_2 473 671 - -
Seca3g11567 992 Pfam C2 domain 59 131 IPR000008 -
Seca3g11567 992 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 627 654 IPR001736 GO:0003824
Seca3g11567 992 Pfam Phospholipase D Active site motif 630 654 IPR001736 GO:0003824
Seca3g11567 992 ProSitePatterns EF-hand calcium-binding domain. 932 944 IPR018247 -
Seca3g11567 992 ProSiteProfiles EF-hand calcium-binding domain profile. 875 910 IPR002048 GO:0005509
Seca3g11567 992 Pfam EF hand 843 863 IPR002048 GO:0005509
Seca3g11567 992 FunFam calcineurin B-like protein 3 788 981 - -
Seca3g11567 992 CDD EFh 843 904 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11567 Seca-Chr3 263979555 263993793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11567 50 780 Phospholipase D Gene Family (Wang group) AT1G55180 62.264 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11567 K01115 - gmx:100812642 1288.48