Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11556 ATGCCACTCCAGCTCATTTTCCTCTTAATTAAGCTACATTTTGTTGTCAGTACTCAACAACAGTTTCATGAATATACAGCCACCAAACTGCTCCACTCCAGAGCCAGAAGCCATTTAAGTGTTGCATTGCCACCATCAGTGTCATCTTCTGAAGTTCCTTCAAGTATTGCACACCCACCTGCTGAGTCATCTTCTGGTGTTGCTGCAAGTATTGCATTTCCACCTTCAAAGTCAATTGACAAAGCTCCTACAAAGAAATGGACACATAGTTCTGTGGATTCTCCAATATCACATCATAAGCATCACTATTCCATGAGAAAGAACCACAATCCAACTCCAGGGCCAACCTACCCAACCCAAGCTCCTACTTACAGCCATCAAGATATAGGTCCTTCAGTCTTCAAATCACAACCTCCCTTCACTTCACCAAAGAGTAAGGATATCCACGCACCTGCACCATCACCAGCATTTCTGTCAGGCCACCTGGATGATCAATCTTCAGTGCCCTCTCCTTCACCTAGAATTTCACCTCTAGGTTCATCGTTGAAGAAGATGAAGACTCCACCACCAGCATATACATTCGTTCTGCCACCTCCACCTCCTAATAAGGATTGCTTGTCAATGACTTGCTCAGAGCCCTTGACATATACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTTAAACTCTGCATCAGTATTTCAATATACAAGTGCTTTCCTCTGGTTTCAGAGCTAGCTGAGGAAATTGCAGCAAGTGTTTTGCTGAACCATAGCCAAGTTCGCATTGTGGGAGCTGATGCAGTGAATCAGCAACTAGAGAAAACCAATGTTCTCATAAACTTGGTACCTAAAGGAGTAAAATTTGATGATACAACGGCATTTTTAATATATAAGAAATTCTGGCACAGGGACATTCTAATAGATGCTTCACTCTTTGGTGATTATGAAGTACTTTATGTTCATTATCCAGCATCTCCACCTTCAACTCCATCAGGTGCTTCTAGTATAGATGATGGACCAAATCCTGGTCATGACAACAATGGAACGATAATGAAACCTTTAGGAGTAGATGTCTCAAAGAAGAAAAATGAAGGGACTAATGGAAGAATGATTTTTATAATTGTGCTGTCATCAATTACAGCTTTTGTTATATTCATTGGACTTGCTTGGCTTTGCTTGTTGAAATGCAGTTCCTGTGCTCATGAACATGAACAAGTTCCAGATGGTTTAATTTCATCCTCTTCAAAACAATCAATAGAAGGGGCTGCTAAAACATTAACTCATGGGAGCATACTGGGTTCTGGATCAGGGTCGTCTAATTCTGGAACAATAAAATACACAGGGTCTGCTAAGATATTTACTTTGAATGACTTAGAGAAAGCAACAAATAAATTCGATTCTTCAAGAATATTAGGAGAAGGAGGCTTTGGACTTGTTTACAAAGGTATTCTAAATGATGGGAGAGATGTAGCAGTGAAGATTCTCAAAAGAGATGATCAGCGTGGTGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCCTGCACCATAGAAATTTAGTTAAATTGATAGGTATATGCATAGAGAAACAAACTCGTTGCCTAGTCTATGAGCTTGTCCCTAATGGAAGTGTGGAATCTCACTTACATGGTGCTGACAAGGAAACTGATCCACTGGATTGGAATGCCAGGATGAAGATTGCACTTGGTGCAGCTCGGGCATTGGCTTATCTGCATGAAGATTCAAATCCTTGTGTCATACATAGAGACTTCAAGTCCAGCAACATCCTGTTGGAATATGATTTTACACCCAAGGTTTCAGATTTTGGATTGGCTAGATCAGCACTGGATGAGGGAAACAAGCACATCTCCACACATGTCATGGGAACATTTGGCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTTGTCAAAAGTGATGTTTACAGTTATGGAGTTGTGCTCCTTGAACTCCTAACTGGAAGAAAGCCAGTGGATTTGTCACAACCACCAGGTCAAGAAAATCTTGTGACTTGGGTTCGTCCACTTCTCACAAGTAAGGAGGGTTTGCAGATGATCATAGACCCAGTTGTAAAGGCCAACATATCTGTTGATACTGTGCTAAAAGTTGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTCTCTCAACGTCCTTTCATGGGTGAAGTTGTTCAGGCCTTGAAGCTGGTATGCAGTGAGTTTGAGGAAACAAACTATACTAGATCAAGGAGTTCTCAAGAAGAAGGTCTTGTAACTAATGTGGAAAGGAAGTTTTCTGGAGTTTCAGATGAAAGAGTGGATTTTTCAGAGTATCAAAAAACCTTTTCCGGCTATCAATCTAGTGAAGAAAAGGTACAATTATCAGCATCAGACCTGCTCAGTACTTCAGGCCTGGAATTTGAGTCATTCAGGAGGCATTCTACTTCAGGGCCTTTGACTATTGGGAAGAAAAGGCACTTCTGGCAAAAATTGAAAGGTTTGTCTAGAGGTAGCACCAGTGAACATGGATTTTCAACTAAACATTGGCCTGGATCTCATTAA 2586 0.4145 MPLQLIFLLIKLHFVVSTQQQFHEYTATKLLHSRARSHLSVALPPSVSSSEVPSSIAHPPAESSSGVAASIAFPPSKSIDKAPTKKWTHSSVDSPISHHKHHYSMRKNHNPTPGPTYPTQAPTYSHQDIGPSVFKSQPPFTSPKSKDIHAPAPSPAFLSGHLDDQSSVPSPSPRISPLGSSLKKMKTPPPAYTFVLPPPPPNKDCLSMTCSEPLTYTPPGSPCGCVWPLQVKLCISISIYKCFPLVSELAEEIAASVLLNHSQVRIVGADAVNQQLEKTNVLINLVPKGVKFDDTTAFLIYKKFWHRDILIDASLFGDYEVLYVHYPASPPSTPSGASSIDDGPNPGHDNNGTIMKPLGVDVSKKKNEGTNGRMIFIIVLSSITAFVIFIGLAWLCLLKCSSCAHEHEQVPDGLISSSSKQSIEGAAKTLTHGSILGSGSGSSNSGTIKYTGSAKIFTLNDLEKATNKFDSSRILGEGGFGLVYKGILNDGRDVAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLVYELVPNGSVESHLHGADKETDPLDWNARMKIALGAARALAYLHEDSNPCVIHRDFKSSNILLEYDFTPKVSDFGLARSALDEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSKEGLQMIIDPVVKANISVDTVLKVAAIASMCVQPEVSQRPFMGEVVQALKLVCSEFEETNYTRSRSSQEEGLVTNVERKFSGVSDERVDFSEYQKTFSGYQSSEEKVQLSASDLLSTSGLEFESFRRHSTSGPLTIGKKRHFWQKLKGLSRGSTSEHGFSTKHWPGSH. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11556 861 Gene3D Transferase(Phosphotransferase) domain 1 545 769 - -
Seca3g11556 861 Pfam Protein tyrosine and serine/threonine kinase 472 742 IPR001245 GO:0004672|GO:0006468
Seca3g11556 861 ProSiteProfiles Protein kinase domain profile. 469 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11556 861 FunFam Receptor-like serine/threonine-protein kinase ALE2 545 762 - -
Seca3g11556 861 FunFam receptor-like serine/threonine-protein kinase ALE2 442 544 - -
Seca3g11556 861 SUPERFAMILY Protein kinase-like (PK-like) 444 742 IPR011009 -
Seca3g11556 861 PANTHER OS01G0750732 PROTEIN 197 763 - -
Seca3g11556 861 MobiDBLite consensus disorder prediction 82 99 - -
Seca3g11556 861 MobiDBLite consensus disorder prediction 333 357 - -
Seca3g11556 861 CDD STKc_IRAK 475 743 - -
Seca3g11556 861 Gene3D Phosphorylase Kinase; domain 1 441 544 - -
Seca3g11556 861 MobiDBLite consensus disorder prediction 109 143 - -
Seca3g11556 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Seca3g11556 861 ProSitePatterns Protein kinases ATP-binding region signature. 475 497 IPR017441 GO:0005524
Seca3g11556 861 MobiDBLite consensus disorder prediction 42 184 - -
Seca3g11556 861 MobiDBLite consensus disorder prediction 42 61 - -
Seca3g11556 861 MobiDBLite consensus disorder prediction 160 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11556 Seca-Chr3 263858145 263864169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11556 202 854 Receptor kinase-like Gene Family AT5G56890 59.029 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca3g11556 PK_Tyr_Ser-Thr 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11556 - - gmx:100814040 1380.54