Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11553 ATGGCTATGGCTTCTACTTCTTTTGCCTTTTCATCTGTTGGTTTGACCGTACCTTTCAAAAAATATGATGTCTTTATCAGCTTTAGAGGTGAGGACACGCGCCCCAGCTTCACAAGCTTTCTCCATGATGCTTTGTGTAGAAACTACATCGAAACATACATAGACAACAGGATCCAAAAAGGAGAGGAGGTATGGGAAGAACTTGTGAAAGCTATCAAAGATTCCAGTATCTCTTTGGTTGTGTTCTCAGAGAACTATGCGTCTTCAACGTGGTGCTTGAATGAACTGCTTGAAATAATGGAGTGCAGGAAAAATGGACATCAAGATGTTATTCCTGTCTTCTACAAAACAGAGCCATCACACGTGCGGAAACAGAGCGGGAGTTACCAAACAGCGTTGGCAAAACACAAGAAGCAGGGCAAAGACAAGATTCAAAAATGGAAAGATGCTCTCTTTGAAGCAGCAAATTTCTCTGGCTTCGATTCTACTGCTTACAGGACTGAACTTGACTTGATTGAAGGCATCACCAAAGAAGTTTTACAGAAATTGAATTACAAGTACACAAGTGAACTTAGATGCCTGTTCATACCCAATGAAAACTATTCACGCATTGAATCTTTAATAAGAACTGATACAGAAAAAGATCGAATCATTGGAATTTGGGGCATGGGAGGCATCGGTAAGACAACCCTTGCAGCTGCTGTTTTTCATAAGGTCTCTTGTGAATATGAAGGTAGTTGCTTCTTAGAAAATGTGACAGAAGAATTAAACAGGCATGGACTCAATTACATATGCAACAGACTTTTTTCTAAGTTACTAAGGGAAGATCTTGGTATTGACACTCCCATGGTAGTGCCCTCTAATGTGATGAGAAGACTCAGACGTATGAAAGCTTTCATTGTACTTGATGATGTGAATTCCTCAAAACTTCTAGAAAACTTGGTAGGAGTTAGGCGTGATTGGCTAGGAGCTGGTAGCAGAGTCATTGTGACAACCAGAGATAAGCAAGTGCTTATAAGTGGAGGGGTTGATGAAATTCATGAAGTCAAGAAATTGAACTTTCAAAAATCCCTTCGACTTTTCAGCTTGAATGCCTTTAACCAAACATATCCTGGAAAGGGATACGAGGAGCTCTCACAAAGAGCAATTGCTTATGCCAAAGGCAACCCTTTAGGTTTGAAAGTTCTGGGATCATTTCTTCGTTCCAAAAGTGAAATAGAATGGGATAGTGCACTATCTAAGCTCAAGGAGTTTCCCAATGCAGAAATCCAGGAAGTGTTGAGGTTGAGTTATGATAACTTAGATGATATTGACAAAAATATATTTCTAGATATTGCATGCTTTCTTAAAGGCTGTAGAAGAAACAAAGTAACAAAAATATTAAATGCATGTGGTTTCTTTGCAGATAATGGGATAAGAAACCTTTTAGACAAGGCTCTTATAACTATTGATTTATATAATCGCATACAAATGCATGGCTTGTTACAAGAAATGGGTAGGGAAATTGTTCGAGAAGAACCTACTGAAAATCTTGGAGGACGCAGCAGATTGTGGGATCCTAAGGAAGTTTGTGATGTATTGACAAATAACAAAGGAACTGGGGCAGTTGAAGGCATATGGTTAGATATGACTCAAATTGCACCCATAAATTTAAGCTCCGAAGCATTTGAAATAATGCCAAACCTAAGGTTACTTGCTTTCCAAGGCATCAAATGGGACTCTAAGATAATTAACTCTGTGTACCTTCCAAAGGGTCTTAAATTATTGCCTAAAAACTTAAGATATTTTGAGTGGGATGGATATCCTTCAAAGTCTCTGCCACCAACATTTTGTCCTGAGAAGCTTGTTGAGCTCTCCCTGCCATACAACAATGTGGAAAAACTTTGGGATGGAGCACAGAATCTGCCAAATTTAGAGAGAATTGACCTTCGTTGCTCCACACACCTGAAAGAGTGTCCAAATCTGTCTCATGCCCCAAATGTTAAATTTGTAGGACTCAGCCACTGTGAAAGCTTGAACCATGTTGATTCATCAATTTTATCTCTCCAGAAGCTTGAAGTTTTGAGTGTGAGTGGATGCACATCACTTAAGAGCCTTTGCAGCAGCACTTTTTCACCATCTCTCCGAGAATTGTATGCTGCACGTTGCCCCAATCTCCAAGAGTTCTCAATCACATTAATGCCTCAAGATCCTTCCACAACTCCTTTTTGTTTGAATTTAGGAGGCTCAGGTTTGATTGAACTACCACCATCCATTTTGCATATGAGAAATCTTGGAAAGTTCTCTTTTCCCATCAGTGACAGTCTTATGCATCTTCCTGAAAACTTTGCCAACGAAATTACACTTTCTGACTCAAGAAAACAAACAAGTGACACTTTAATCACCTTAAGTAAAGTGCTACCAAGCCCTGGCTTCCAGAGTGTGAGACGTTTATTTTTTGACTTTTGTCATAGTTTGTCAGAACTTCCAGACAATATCTCTTCTTTATCATCATTAGAGTATTTAAGACTATATGATTGTACCATCATAAGCTTGCCCAAAACCATTGAGTATCTTCCACGACTTCAACATCTTGAAGTTGATGAATGTAAAAAGCTTAGATCTATACCTGCACTTCCACAGTCAATTCAATGCTTCCATGCATGGAACTGTGAATCTCTTGAGGAAGTGTTAAGTTCAATGACAGAACCATCCATGAAACACGAGTGTACTTTTCTGTTCCCTAACTGTGTAAAATTGAATAAAGATTCATACCATGCCATTCTCAAAGATGCCACTGTTGGGATTGAACTTGGAGCAAAACCATTGTCAGAAGTAGTATTAGAAGATCATGATGATGATGAAGAAGAAACATATGCGTTTGAGACAGTAAGAAGTGGTAAAGTTTGCTACTTTTTACCAGCTAGAAGTGACAAACTTCGAGAATGGTTTAGTTACCACTCTACACAAGTTATATTCACTGTTGAACTACCCCCTAATCTGGTGGGTTTGGTTTTCTACTTGGTTCTTTCTCAAGTCCAATCATGCCACATTGGATATGGTGGAAGTTTTGGATGTGAATGCTGCTTGGAAACTAGTTGGGATGAAGAGATCAATATAACAAGTTTCTTTGTAGCTGAAAGCATCTGGTTCAATTATTATACATCATTTGAAATGATGTCAGATCATGTGTTTTTATGGTATGATGCAGAGTGTTGCAAGCAGATAATGGAAACCATTAAAGAAAGTAGAAAAGCCATCAATCACAGGAGAGCCAGATACAAGTCAAAGATCACATTTGAATTCTTTGCTCAAAATATGGATAATGAGGAAGAAATAATAAAAGAGTGTGGGTTACGCTGGATATATCCCTCAGAAGATAAAACTGTGGAGAAGGGAGGAGGGTGTAAATCCAAGAGAAGTAGGGAAGTTCATGAATTAGAAGCCAGTACAATCCAAAATAGAGATGTGGGCTCTGAATCTGATAAACAAGAAGAAATGATTCCTCCAACAAAGAAACTAAAACATGTATTTGGAACTCCCTCCAATCTGGAATCAAATCAAGAAATGGAAGACTTGAGGCGTTCACTTGAAGAACTCTTGCATATTGGATTTTGTGGAAACCTCTTGTAA 3612 0.3859 MAMASTSFAFSSVGLTVPFKKYDVFISFRGEDTRPSFTSFLHDALCRNYIETYIDNRIQKGEEVWEELVKAIKDSSISLVVFSENYASSTWCLNELLEIMECRKNGHQDVIPVFYKTEPSHVRKQSGSYQTALAKHKKQGKDKIQKWKDALFEAANFSGFDSTAYRTELDLIEGITKEVLQKLNYKYTSELRCLFIPNENYSRIESLIRTDTEKDRIIGIWGMGGIGKTTLAAAVFHKVSCEYEGSCFLENVTEELNRHGLNYICNRLFSKLLREDLGIDTPMVVPSNVMRRLRRMKAFIVLDDVNSSKLLENLVGVRRDWLGAGSRVIVTTRDKQVLISGGVDEIHEVKKLNFQKSLRLFSLNAFNQTYPGKGYEELSQRAIAYAKGNPLGLKVLGSFLRSKSEIEWDSALSKLKEFPNAEIQEVLRLSYDNLDDIDKNIFLDIACFLKGCRRNKVTKILNACGFFADNGIRNLLDKALITIDLYNRIQMHGLLQEMGREIVREEPTENLGGRSRLWDPKEVCDVLTNNKGTGAVEGIWLDMTQIAPINLSSEAFEIMPNLRLLAFQGIKWDSKIINSVYLPKGLKLLPKNLRYFEWDGYPSKSLPPTFCPEKLVELSLPYNNVEKLWDGAQNLPNLERIDLRCSTHLKECPNLSHAPNVKFVGLSHCESLNHVDSSILSLQKLEVLSVSGCTSLKSLCSSTFSPSLRELYAARCPNLQEFSITLMPQDPSTTPFCLNLGGSGLIELPPSILHMRNLGKFSFPISDSLMHLPENFANEITLSDSRKQTSDTLITLSKVLPSPGFQSVRRLFFDFCHSLSELPDNISSLSSLEYLRLYDCTIISLPKTIEYLPRLQHLEVDECKKLRSIPALPQSIQCFHAWNCESLEEVLSSMTEPSMKHECTFLFPNCVKLNKDSYHAILKDATVGIELGAKPLSEVVLEDHDDDEEETYAFETVRSGKVCYFLPARSDKLREWFSYHSTQVIFTVELPPNLVGLVFYLVLSQVQSCHIGYGGSFGCECCLETSWDEEINITSFFVAESIWFNYYTSFEMMSDHVFLWYDAECCKQIMETIKESRKAINHRRARYKSKITFEFFAQNMDNEEEIIKECGLRWIYPSEDKTVEKGGGCKSKRSREVHELEASTIQNRDVGSESDKQEEMIPPTKKLKHVFGTPSNLESNQEMEDLRRSLEELLHIGFCGNLL. 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11553 1203 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 185 - -
Seca3g11553 1203 ProSiteProfiles TIR domain profile. 20 183 IPR000157 GO:0007165
Seca3g11553 1203 Pfam NB-ARC domain 205 435 IPR002182 GO:0043531
Seca3g11553 1203 Pfam TIR domain 21 189 IPR000157 GO:0007165
Seca3g11553 1203 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 723 IPR044974 GO:0006952
Seca3g11553 1203 Gene3D - 195 344 IPR027417 -
Seca3g11553 1203 Gene3D Ribonuclease Inhibitor 736 915 IPR032675 -
Seca3g11553 1203 Gene3D Ribonuclease Inhibitor 523 733 IPR032675 -
Seca3g11553 1203 SUPERFAMILY L domain-like 540 896 - -
Seca3g11553 1203 Pfam Leucine Rich Repeat 614 633 IPR011713 -
Seca3g11553 1203 SMART till_3 21 157 IPR000157 GO:0007165
Seca3g11553 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 445 IPR027417 -
Seca3g11553 1203 PRINTS Disease resistance protein signature 217 232 - -
Seca3g11553 1203 PRINTS Disease resistance protein signature 292 306 - -
Seca3g11553 1203 PRINTS Disease resistance protein signature 386 400 - -
Seca3g11553 1203 PRINTS Disease resistance protein signature 680 696 - -
Seca3g11553 1203 Coils Coil 1176 1196 - -
Seca3g11553 1203 Gene3D - 351 435 IPR042197 -
Seca3g11553 1203 Gene3D - 19 189 IPR035897 -
Seca3g11553 1203 SUPERFAMILY "Winged helix" DNA-binding domain 422 527 IPR036390 -
Seca3g11553 1203 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 160 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11553 Seca-Chr3 263836923 263841428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11553 20 858 WRKY Transcription Factor Family AT4G12020 31.140 1.53e-101 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11553 - - gmx:100783388 1385.93