Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11552 ATGGCTATGGCTATGGCTTCTACTTCTTCTTCCGTTGCCTCTATGGCTGTCACAGTACCTCTCAAAAAACATGATGTTTTCATCAGCTTTAGAGGTGAGGACACACGTGGCAATTTCACAAGTCATCTTCATGCTGCTTTGCGCCGAAGCTATATTGAAACCTACATAGACTACAGAATCGACAGAGGCGAGGAGGTTTGGGCAGAACTTGTGAAAGCGATCAAAGACTCGAGTGTCCTTTTGGTTCTGTTCTCAGAAAACTATGCGTCTTCAACATGGTGCTTGGACGAACTCGTAGAAATAACGGAGTGCAAGAAAAATGGACAAGGTCAAGATGTTATTCCAGTGTTCTACAAAATAGAGCCATCACACGTGCGGAAGCAGACGGGAAGTTACCACACAGCGTTCGTTAAACACAAGCAGAGCGAGGAGAAGAAGATGCAAAAGTGGAAGGATGCTCTTTGCGAAGCAGCCAATTTATGTGGCTTCCATTCTCGTCTTTACAGGACCGAATTTGACCTGATTGAAGACATCACCAAAACAGTTTTGCGAAAACTAAATCACAAGCATACAAATGAACTTGGAGGCTATTTTATATCTGATGAAAACTTTTCACACATTGAATCTTTATTAAGAATTGATTCAAAACAAGTTCAAATCATTGGAATTTGGGGCATGGGAGGCATAGGCAAGACAACTCTTGCTGCTGCTATTTTTCACAAGTTCTCTCACCAATATGAAGGTAGTTGCTTCTTAGAAAGTGTGACAGAAGATTCAAAAAAGCATGGACTCGGTTTCATATGCAATAGACTTCTTTCTACATTACTAATGGAAGATCTTCATATTGCTACTCTTAAAGTAATACCCTCTAATGTTGTCAGAAGAATTAGTCGTATGAAAGCTTTTGTTGTACTAGATGATTTGAATGCTTCAGATCTTCTAGAAAACTTGGTTGGAGTATGGCTTGATTGGCTAGGAGCTGGTAGTAGAGTCATTGTGACGACTAGAGATAAGCATGTGCTTATAAGTGGAGGAGTTGACAAAATCCATGGAGTCAAGGAAATGAACTTTCAAAACTCCCTTCGACTTTTCTGCTTGAATGCTTTTAACGAAACTCATCCCAAACAAGGATACAATGAGGTATCAAAAAGAGCAGTTGATTATGCCAAAGGCATCCCTCTAGCATTGAAAGTTTTGGGATCATTTCTTCGTTCCAAAAGTGAAAAAGAATGGGATAGTGCACTGACTAAATTAAAGAAGATTCCCAATGCAGAAATTCAGAAAGTGTTGAGATTGAGTTATGATGAATTAGATGATAAAGAGAAAAACATATTCCTAGACATTGCATGCTTTTTTAAAGGGCATGGAAGAGACAATGTAGAAAAAATATTGAATGCTTGTGGTTTCTTTGCAGATATAGGGATAAGAAACCTTATAGATAAGGCTCTTATAAGTGTTGATATGAATAATTGTATAGAAATGCATGACTTGATCCGAGAAATGGGCAGGGAAATTGTTCGAGAAGAATCTATTAAGAATCCTGGACGACGCAGCAGGTTGTGGGATCCTGAGGAAGTTTGTGATGTATTGACAAATAATAGGGGAACTGGTGAAGTTGAAGCCATATTTTTAGATATGACTCAAATTACTTACATAAATTTAAGCTCCAAAGCATTCAAAAAGATGCCGAACCTAAGGTTAATTTCTTTTGAAGCCTTTAACCAGGATTTTAAGAGAATTAATTCTGTGTTCCTTCCTAGGGGTCTTGACCTATTGCCTAAAAATTTAAGATATTTTGGATGGGATGGATACCCATTGAAGTCTCTACCATCAACTTTTTGTCCTGAGATGCTTGTTGAGCTTTCCCTGCCATATAGCAATGTGAAAAAACTTTGGAATGGTGTACAGAATTTGCCAAATTTAGAGATGCTTGATCTCAATGGCTCCAGATACTTGAGGGAGTGTCCAAATTTGTCCCGTGCCCCAAATCTTAAATATGTAAAACTCAGTAATTGTGTAAAATTACCCTCTGTTGATCCATCAATTTTCTCTCTCCAAAAACTTAAAGTTTTAAATGTGGGAGGGTGTATGTCACTTAAGAGCCTTGGCAGCAAAACTTGTTCACCATCACTCCAAGGATTGTATGCCTGGGGTTGTTACAATCTCCAAGAGTTCTCTGTCACATTAATGCCTACCACAACTCGTTTGTGTTTGAATTTAGGAGGGTCAGGTTTGAATGAACTTCCATCATCAATTTTGCAGATAAAAAATCTTGAAAACTTTTCTTTTCCGATAAGTGATGGTCTCATGGACCTCCCTGAAAACTTTGCCCCAAAAATTACACTTTCTGGGTCAGGGAAGCATGAACGTGACACTTTTTTCACCTTGCATAAAGTACTGCCTAGCCCTGGCTTTCGGAGTACAAGATGTCTAGTTTTTGACTTTTGTCATAACTTGTCTGCAATCCCAGATAATATCTCCTTGTTATCATCATTACAGCACTTAATACTAGTTGATAGTGCTATCATAAGCTTGCCAGAAAGCCTTAAGTATCTTCCACGACTCAAACTCCTAGAAGTTAATGGATGTAAAATTCTTCGATCTATACCTACACTTCCACGGTCCATTCAATGCTTCCATGTCTGGAACTGTGAGTCTCTTCAGACAGTGTTGAGTTCAACAAGTGAACCATCCGAAAAACCCAAGTGTACTTTTATGCTCCCTAACTGCATAAAATTGGGACTACATTCATATGACACCATTTTGAAAGATGCTATTGCTAGGATTGAACATGGAGCAAAACAACTTGCAACATTATTGAAAAATAAAGAAAATGCATCCTTGGATCATGATGATGATGAGGTATTATGTACATCAAGAAGTGGTAAAATTTGCTACTTTTTACCAGCCATCAGTGACAAAGTTCGAGATTGGTTCCATTACCATTCTACACAATCTTTGGTCACTGTTGAACTTCCCTCCAATTTGTTAGGTTTCGCCTACTACTTGGTGCTTTCCCAAGTCCAATCATGCCACATTGGAGGCTATGGAAGTTTAGGAAGCAAATGCTACTTGGAAACAAGTTGGGGCGAAAGTATCTATATAACAAGTTTCTTTGTAGATGAAAATACCTTGCTTAATCCTGATACTTCATTTGAAATGATGTCAGATCATGTGCTTTTATGGTATGATGCACAATGTTGCAAGAAGATAATGGAAGTGGTTAAAGAAAGAAAAGCCATTAATGACATGAGCACCACTCATAATCCAAACCTTACATTTATATTCTTTGCTAAAACTCAATATGATGAAGTAGTAGCGATAAAAGAGTGCGGGATTCGTTGGATATATCCCTTAGAAGATCAAATTGTGAAGGAAGGAGGAAGGTGTAAATCCAAGAGAAGTAGGGAAATTTATGAATTGGAAACCAATAATGTAGTCCAAAATAGAGCTGAGCGATCGCAAGAAGAAAATGTTCCTCCAACAAAGAAACTCAAGCAAGTAGATCAAGAAATGGAAGACTTGAGGTGTTTACTTGAAGAGCTCTTGCATATTGAATTTGGTCGAGACCGTATGTAA 3579 0.3822 MAMAMASTSSSVASMAVTVPLKKHDVFISFRGEDTRGNFTSHLHAALRRSYIETYIDYRIDRGEEVWAELVKAIKDSSVLLVLFSENYASSTWCLDELVEITECKKNGQGQDVIPVFYKIEPSHVRKQTGSYHTAFVKHKQSEEKKMQKWKDALCEAANLCGFHSRLYRTEFDLIEDITKTVLRKLNHKHTNELGGYFISDENFSHIESLLRIDSKQVQIIGIWGMGGIGKTTLAAAIFHKFSHQYEGSCFLESVTEDSKKHGLGFICNRLLSTLLMEDLHIATLKVIPSNVVRRISRMKAFVVLDDLNASDLLENLVGVWLDWLGAGSRVIVTTRDKHVLISGGVDKIHGVKEMNFQNSLRLFCLNAFNETHPKQGYNEVSKRAVDYAKGIPLALKVLGSFLRSKSEKEWDSALTKLKKIPNAEIQKVLRLSYDELDDKEKNIFLDIACFFKGHGRDNVEKILNACGFFADIGIRNLIDKALISVDMNNCIEMHDLIREMGREIVREESIKNPGRRSRLWDPEEVCDVLTNNRGTGEVEAIFLDMTQITYINLSSKAFKKMPNLRLISFEAFNQDFKRINSVFLPRGLDLLPKNLRYFGWDGYPLKSLPSTFCPEMLVELSLPYSNVKKLWNGVQNLPNLEMLDLNGSRYLRECPNLSRAPNLKYVKLSNCVKLPSVDPSIFSLQKLKVLNVGGCMSLKSLGSKTCSPSLQGLYAWGCYNLQEFSVTLMPTTTRLCLNLGGSGLNELPSSILQIKNLENFSFPISDGLMDLPENFAPKITLSGSGKHERDTFFTLHKVLPSPGFRSTRCLVFDFCHNLSAIPDNISLLSSLQHLILVDSAIISLPESLKYLPRLKLLEVNGCKILRSIPTLPRSIQCFHVWNCESLQTVLSSTSEPSEKPKCTFMLPNCIKLGLHSYDTILKDAIARIEHGAKQLATLLKNKENASLDHDDDEVLCTSRSGKICYFLPAISDKVRDWFHYHSTQSLVTVELPSNLLGFAYYLVLSQVQSCHIGGYGSLGSKCYLETSWGESIYITSFFVDENTLLNPDTSFEMMSDHVLLWYDAQCCKKIMEVVKERKAINDMSTTHNPNLTFIFFAKTQYDEVVAIKECGIRWIYPLEDQIVKEGGRCKSKRSREIYELETNNVVQNRAERSQEENVPPTKKLKQVDQEMEDLRCLLEELLHIEFGRDRM. 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11552 1192 FunFam Disease resistance protein (TIR-NBS-LRR class) 356 438 - -
Seca3g11552 1192 Gene3D - 355 438 IPR042197 -
Seca3g11552 1192 Pfam Leucine Rich Repeat 618 636 IPR011713 -
Seca3g11552 1192 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 163 IPR035897 -
Seca3g11552 1192 Gene3D - 189 347 IPR027417 -
Seca3g11552 1192 SMART till_3 23 160 IPR000157 GO:0007165
Seca3g11552 1192 PRINTS Disease resistance protein signature 295 309 - -
Seca3g11552 1192 PRINTS Disease resistance protein signature 220 235 - -
Seca3g11552 1192 PRINTS Disease resistance protein signature 636 652 - -
Seca3g11552 1192 PRINTS Disease resistance protein signature 389 403 - -
Seca3g11552 1192 SUPERFAMILY L domain-like 494 893 - -
Seca3g11552 1192 Gene3D Ribonuclease Inhibitor 516 736 IPR032675 -
Seca3g11552 1192 Gene3D Ribonuclease Inhibitor 737 920 IPR032675 -
Seca3g11552 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 448 IPR027417 -
Seca3g11552 1192 Pfam NB-ARC domain 207 437 IPR002182 GO:0043531
Seca3g11552 1192 Gene3D - 21 188 IPR035897 -
Seca3g11552 1192 Coils Coil 1165 1185 - -
Seca3g11552 1192 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 188 - -
Seca3g11552 1192 ProSiteProfiles TIR domain profile. 22 186 IPR000157 GO:0007165
Seca3g11552 1192 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 887 IPR044974 GO:0006952
Seca3g11552 1192 Pfam TIR domain 23 192 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11552 Seca-Chr3 263824689 263829236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11552 22 840 WRKY Transcription Factor Family AT4G12020 33.453 3.85e-107 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11552 - - gmx:100805490 1486.47