Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11547 ATGAACAACAACAACATCTCATCAAGAAATGGTAACAGCAGTACCGCCCAGGCTTGCGCGGCTTGTAAATACCAACGCAGGAAGTGCGCACCTGACTGCATTCTCGCACCTTATTTTCCTCACGATCGCCAACGCCAATTCCTTAACGCTCATAAATTATTCGGTGTCAGTAACATCACCAAAATCATCAAATACCTTGACCCTCCTCTTAAGGACCAAGCCATGCGCACCATCATTTTCCAATCTGATATGCGCGCTAACGACCCTGTTGGTGGTTGTTACAAATACATCCAAGACCTCCAAGCTCAGATCGATTACTACCGCGCCGAGCTCGACCTCGTCCTTCAACAACTCGCCATTGTCCAGGCCCAGGCCCAGGCCCAAGCCCAACAACTCCACCACCACCATGTCCATGCCAATGCCGATGTCGATGTCATGAATGCTAATGCTGCAATCTATAATAACCCTAACCCTGCAGTTTCCTCTTTCATTTCTGCCACTCCTAATTACCATTACCTTCAAACACAACAACAGGATCAATACATTATGCTACATGAAAATAATAACGGCAACGGCAACGGCAACACCACTCCTCTGCAAGAACACATTAACACGTGGGCGATGCAGAACTCCATGTCCCTCTCATCTCTGTCACTGCACGGACAGAGTAGCAATGCGAGCGATGAGTTTGATCAGAAGCCAATGCTTGACTTACCTTCCGATGAAAGAAACGATCAATTAGGGTTCGATTCTGGAGAATTAGTCCACCACAGTGATGAAGGAGTTGTGTTTAAGATAGACGACGATGCAGTAATAAATGCAGAGGGTGAGTCCATCCAACAATCTCAGGACCATGATCTCAAAGGTGCAGCGACTTTGTTTACACTTACAAATTGTACTAGCTAG 906 0.4658 MNNNNISSRNGNSSTAQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKYLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQAQIDYYRAELDLVLQQLAIVQAQAQAQAQQLHHHHVHANADVDVMNANAAIYNNPNPAVSSFISATPNYHYLQTQQQDQYIMLHENNNGNGNGNTTPLQEHINTWAMQNSMSLSSLSLHGQSSNASDEFDQKPMLDLPSDERNDQLGFDSGELVHHSDEGVVFKIDDDAVINAEGESIQQSQDHDLKGAATLFTLTNCTS. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11547 301 Coils Coil 97 117 - -
Seca3g11547 301 MobiDBLite consensus disorder prediction 217 251 - -
Seca3g11547 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 157 - -
Seca3g11547 301 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Seca3g11547 301 MobiDBLite consensus disorder prediction 234 251 - -
Seca3g11547 301 Pfam Lateral organ boundaries (LOB) domain 18 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11547 Seca-Chr3 263785952 263787431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11547 17 217 AS2 family AT3G13850 50.481 2.52e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g11547 LOB 3.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11547 - - cam:101515615 342.043