Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11542 ATGATGAAGGATTTGATGTTCCAAAAGCAGCAACAACAGCAACAACCGGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCCGGTGAAGCAAGTGTTTCCTCAGGCAACAGAACTGAAATTGGTACAAGTTACCCTCAACAATACTTGGCTCCACCACCAACTCAGTCTCAACCTGCAAAGAAAAAGAGAAACCTTCCTGGCAATCCAGACCCAGATGCTGAGGTTATTGCCTTGTCCCCCAAGAGTCTTCTGGCAACAAACAGGTTCATTTGTGAGATCTGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTGAAGCAGAGAACAAGTAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCAACTTGTGTGCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAATGTTCCAAGAGGTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGGGTGCAAGAGCTATCACAGGCACAGCCAACCCACTTTTACCCTCACAACAACCTTCACCCTCTCACCACATGATAAATCTCCAAACCCAATTCAACCCCCAAGACCTCCAAGCTAATTTCCCATTGAAAAAGGAGCAACAGCAAAGTTTCAACCTTGGTACAGAAATACCCCCCTGGCTTGGCCCACCCACTGTTGATCATCTCTCCTCATCCTCATCTATCTTCTCCCCAACCCCAAGATTGGACCAAGAATTTTCACAAACACATCATCAACAACAAAACCCTAACCCTAGCCTTGGTCCCACTCTCCCTCCCTACCAAACAGTGCCTTCCCCACACATGTCAGCTACAGCTTTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGACCAGAACTGGTTCCTCACCAGCCATGATCAGGACCCACCAGCAGGCTCACGTGTCTGCTGATTCTACCAACAATTCCAGTGGTAATTTTGGTTTGAACTTGTCCTCACGTGAAGACCAGATGACTCCCAGTACTTCAACAACAACTACTTCTAATACAGGGTTTGGCCATGGTTTAACATCATCTTTTGGGAATAAAGCTGCACCCTCTTCTTCTGCTTCTGGTGTTCCTTCATCTCTTCTTCATGATGTTCTCAACTCTTTCTCTTCCCCTTCTGGCTTTGAAGGAACCCCTTTTGAGGACCCATTTGGTGGCATTATGAATTCAAAGAAAGATCAAAACTTGCATGACACCCTTTCCAAAACAACCACCTCCACCCACCTTGCCGGCGCCGCCGATGACGGTGGCGGCGGCGGAGGCGGAAATGAAGGGTTGACGAGGGACTTTTTGGGTCTTAGGCCCCTCTCTCATAGTGATATTCTAAGCATGGCTGGTATTGGAAACTGCATGAATGATCAACAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1605 0.4698 MMKDLMFQKQQQQQQPVVEENMSNLTSASGEASVSSGNRTEIGTSYPQQYLAPPPTQSQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEEGARAITGTANPLLPSQQPSPSHHMINLQTQFNPQDLQANFPLKKEQQQSFNLGTEIPPWLGPPTVDHLSSSSSIFSPTPRLDQEFSQTHHQQQNPNPSLGPTLPPYQTVPSPHMSATALLQKAAQMGATMTRTGSSPAMIRTHQQAHVSADSTNNSSGNFGLNLSSREDQMTPSTSTTTTSNTGFGHGLTSSFGNKAAPSSSASGVPSSLLHDVLNSFSSPSGFEGTPFEDPFGGIMNSKKDQNLHDTLSKTTTSTHLAGAADDGGGGGGGNEGLTRDFLGLRPLSHSDILSMAGIGNCMNDQQNQSQKPWQG. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11542 534 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Seca3g11542 534 MobiDBLite consensus disorder prediction 1 64 - -
Seca3g11542 534 MobiDBLite consensus disorder prediction 363 428 - -
Seca3g11542 534 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Seca3g11542 534 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 523 IPR031140 -
Seca3g11542 534 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Seca3g11542 534 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Seca3g11542 534 FunFam protein indeterminate-domain 12-like 70 138 - -
Seca3g11542 534 MobiDBLite consensus disorder prediction 286 318 - -
Seca3g11542 534 MobiDBLite consensus disorder prediction 282 329 - -
Seca3g11542 534 MobiDBLite consensus disorder prediction 1 75 - -
Seca3g11542 534 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Seca3g11542 534 Gene3D Classic Zinc Finger 145 223 - -
Seca3g11542 534 SMART c2h2final6 91 113 IPR013087 -
Seca3g11542 534 SMART c2h2final6 132 162 IPR013087 -
Seca3g11542 534 SMART c2h2final6 167 187 IPR013087 -
Seca3g11542 534 Gene3D Classic Zinc Finger 72 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11542 Seca-Chr3 263750639 263753183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11542 22 534 IDZ Gene Family AT3G13810 46.435 2.63e-138 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g11542 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11542 K25870 - gmx:100785687 711.449