Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11533 ATGCAAATGGTAGCTATTAGACCTGTGGACTATGAACCAAAGGAAGGAGAGATCACATTGGGAACAATGAGCTTCAAGAAGGGAAGAAATCTCAATGACTTGTATAAACCTGATGGATTGGATGAGGTTGTTACTGAAGAATCTACATTCTCAAAGAGAAGGAAGATGGGAAATCTGAAGCTGCAAACCACATTCTCATTCAAATATCTACTTTCAGATAATTCTGGCTCAAAGGAAGGTGGTGATGATGACATGTTCAATAAACAAAGCCCCACAATTTTGTTACCAAAACCAGAAATTTGGTTTTCACCAAAGTCAATTGGTGAGCTTGATGTAGCTGCAATAAAGCTGCAGAAAGTTTACAAGAGCTACAGGACTAGAAGAAATTTGGCAGATTGTGCAGTTGTTTGTGAGGAGCTATGGTGGAAGGCTTTAGACTTTGCTGCTCTTAGCCGATGCTCTATATCACATTTTGACTCAGTTAAATCAGAAACAGCCGTTTCAAAATGGGCAAGAGCTAGGACCATGGCTGCTAAGGTGGGAAAAGGTTTGTGTAAAGATGATAAAGCACAGAAATTAGCTCTAAGGCACTGGCTTGAAGCTATTGATCCCCGTCATCGTTATGGACACAACTTGCACTTATACTATGTTGTATGGTTTAATAGCCAGAGTTCACAACCTTTTTTCTACTGGTTGGATGTTGGAGATGGCAAAGAAGTAAATCTTGAGGTGTGCCCAAGAAGTGAATTACAGAGGCAGTGCATAAAGTACCTTGGACCTAAAGAAAGGGAAGCATATGAAGTGATTGTAGAGGGAGGAAGGCTTGTTTATAGAAAAAGCAAGGACCTTGTACACACTGATGAGGGATCTAAGTGGATTTTTGTTCTTAGCTCATCTAGAGTTTTGTACGTTGGGGAGAAAAAGAAAGGCCAATTTCAACACTCAAGTTTTCTAGCTGGGGGTGCTACTATTGCATCTGGAAGATTGGTTGCCCAAAATGGAGTTCTTCATGCTATATGGCCCTATAGTGGTCATTACCGCCCTACAAAGAAGAATTTTATGGAATTCATTGGCTTCTTGATGGAACATAATGTGGACTTGACAAATGTAAAGAAGTATGCACTTGATGATGATGTGCCACCTTCAAAACCGGTAGATGAAGAGCTGCAGTTTGAGTCCACAGAGGCTAAGTCTTCCAGTGATGACTCTGCCACTGCCAAAAATTGCAGTCAAGATAATGTGTGTCACATTGAACATAAAGAGAGCAAGCCATTGTCAAGTAAATGGACTACTGGAGCTGGTCCTAGGATTGGTTGTGTGAGAGAGTACCCAGCAAAACTCCAAGTTAAGGCACTTGAACAGCTCAATCTATCACCTAGAGTCAACCATGGAAAATTTGCTGCCAGGGCACCCATTCCCTCCCTAAGGCCTAGTCCAAAAATTCACCTGTCCCCTAGGCTTGTGCACATGGGAATTCCTAGCCCAAGAGAGAAGAGTGGTGACAAGAGCAAGAGAAAGTGGAAGTTATGGAGGAGCTCTTCAGAAGGTTGTGGGTTTGGATCCTCCATGAAGAAAGGGCACACTGGTGCTGCTTCTGACAAGTATTGTCCCTCGTTTGTGGTGGATGAAGAAGCATTTGCTGCTGCAGTGGCCACTGTGGTACGAACTCCACTCAAAGACTTCATGGTCATCAAGCACGAATGGGCTGCCACTCGCATCCAGGCTGTCTTTCGAGGCTTCTTGGCAAGGCGAGCCTTAAGGGCCCTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTCGTGGTCGGCAAGTGAGAAAGCAAGCAGCTGTTACTCTAAGGTGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGAGGAAGTCTCCACAAGGGAAAGCTGTACAGAAACTACTAAATGAACATCGCAACCAAGTTGATCCTGTTAAGCAGGCTGAGCAAGGGTGGTGTGACATTCCGGGAACTGTGGAAGAAGTTAAAACAAAACTAAAAATGAGGCAAGAAGGAGCAATTAAGAGGGATAGAACAATGACATACTCTCACTCTACTCAGGAATCAAGAGTGAGTGCTAGTCCAAATTCTAAAACTGCTAAGCCAGTGACTCCTCTCAAGCACCGCAGCCAAGATAGCAAGAGCTCTGGAGGTAGCTTGTTAGAACGCTGGATAGCAGCTAAGCCATGGGAGAGCAGGTTGATGGAAGAGATATATTTTGACTCACCAGACATGACTCCATTGTCCAGGAAAAATGATGATCCTGTTCTCCCCTTAAATTCATATCAACAAAATGGCTTAGTCAAAGCAAGAGGGAATGGTGTGACAACCAGGATTTCATCTAAATCTCTTACAACCAGTCAATCAACTCCATCATCTTCAGCCAAAAGCTCTGACTGCATGTATGATGATAGCCCTGCATCCACTTCATCCACATCTGAACCATCTATCAACAACACTGCTAAGGTGGAAGCAACAGAGGAAACAAATATTTGTAAACCAAGCTACATGAATATGACAGCATCAACTAAAGCTAAACTGAAAGCTTGTAGATTTTCTCAGAATTCAAAGAGACTCTTTATGGATGATTGTCTGTCTCATAGCAATAGAACTGACTTTCTAAGTGGAGATACTAGAAGCTGTTCTGGTTCCTATCCTGATTCAACTAATATATGGAAAGATCTCTATGCAACACCACTAAGGGCAAGCTATCAAAAACGATATACAGTGGGAAATAAGTACTTGCTATGA 2775 0.4303 MQMVAIRPVDYEPKEGEITLGTMSFKKGRNLNDLYKPDGLDEVVTEESTFSKRRKMGNLKLQTTFSFKYLLSDNSGSKEGGDDDMFNKQSPTILLPKPEIWFSPKSIGELDVAAIKLQKVYKSYRTRRNLADCAVVCEELWWKALDFAALSRCSISHFDSVKSETAVSKWARARTMAAKVGKGLCKDDKAQKLALRHWLEAIDPRHRYGHNLHLYYVVWFNSQSSQPFFYWLDVGDGKEVNLEVCPRSELQRQCIKYLGPKEREAYEVIVEGGRLVYRKSKDLVHTDEGSKWIFVLSSSRVLYVGEKKKGQFQHSSFLAGGATIASGRLVAQNGVLHAIWPYSGHYRPTKKNFMEFIGFLMEHNVDLTNVKKYALDDDVPPSKPVDEELQFESTEAKSSSDDSATAKNCSQDNVCHIEHKESKPLSSKWTTGAGPRIGCVREYPAKLQVKALEQLNLSPRVNHGKFAARAPIPSLRPSPKIHLSPRLVHMGIPSPREKSGDKSKRKWKLWRSSSEGCGFGSSMKKGHTGAASDKYCPSFVVDEEAFAAAVATVVRTPLKDFMVIKHEWAATRIQAVFRGFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQARVKARNVRKSPQGKAVQKLLNEHRNQVDPVKQAEQGWCDIPGTVEEVKTKLKMRQEGAIKRDRTMTYSHSTQESRVSASPNSKTAKPVTPLKHRSQDSKSSGGSLLERWIAAKPWESRLMEEIYFDSPDMTPLSRKNDDPVLPLNSYQQNGLVKARGNGVTTRISSKSLTTSQSTPSSSAKSSDCMYDDSPASTSSTSEPSINNTAKVEATEETNICKPSYMNMTASTKAKLKACRFSQNSKRLFMDDCLSHSNRTDFLSGDTRSCSGSYPDSTNIWKDLYATPLRASYQKRYTVGNKYLL. 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11533 924 SMART iq_5 109 131 IPR000048 GO:0005515
Seca3g11533 924 SMART iq_5 588 609 IPR000048 GO:0005515
Seca3g11533 924 SMART iq_5 565 587 IPR000048 GO:0005515
Seca3g11533 924 MobiDBLite consensus disorder prediction 685 726 - -
Seca3g11533 924 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 52 480 IPR044159 -
Seca3g11533 924 MobiDBLite consensus disorder prediction 377 409 - -
Seca3g11533 924 ProSiteProfiles IQ motif profile. 590 617 IPR000048 GO:0005515
Seca3g11533 924 Gene3D - 564 617 - -
Seca3g11533 924 MobiDBLite consensus disorder prediction 751 830 - -
Seca3g11533 924 MobiDBLite consensus disorder prediction 764 830 - -
Seca3g11533 924 Pfam IQ calmodulin-binding motif 568 587 IPR000048 GO:0005515
Seca3g11533 924 Pfam IQ calmodulin-binding motif 113 129 IPR000048 GO:0005515
Seca3g11533 924 Pfam IQ calmodulin-binding motif 590 607 IPR000048 GO:0005515
Seca3g11533 924 MobiDBLite consensus disorder prediction 692 726 - -
Seca3g11533 924 ProSiteProfiles IQ motif profile. 566 594 IPR000048 GO:0005515
Seca3g11533 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 608 IPR027417 -
Seca3g11533 924 MobiDBLite consensus disorder prediction 377 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11533 Seca-Chr3 263644168 263655035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11533 504 904 IQD Protein Family AT1G72670 44.226 1.34e-78 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11533 - - pvu:PHAVU_010G137300g 797.349