Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11528 ATGAATGAAAGCGCGAGGACGGAAAATGTCAAAACCAAGCACCCTCAATTGTTGTATGAATCCAGGCTGTATAAAATACTGCAAGGAGGAAATGGCATACCGAATGTGAAATGGTTTGGTGTTGAAGGAGAATACAATGTCCTTGTAATGGATTTACTGGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGGAAATTGTCGCTCAAAACTGTTCTCATGCTTGCTGATCAAATGATAAATCGAGTCGAATTTGTTCATTCCAAGTCATTTTTACATAGGGACATCAAGCCAGACAACTTTCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATATCATTGACTTTGGCCTTGCTAAGAAATACAGAGACACCTCTACACATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGGTATGCCAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTATTTTTTAAGAGGGAGTCTGCCTTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGCCGTGGCTATCCTTCAGAATTTGCATCATACTTCCATTATTGTCGGTCACTGAGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGACTTTTGCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGTCACTCCTCCTGCCCGTGCCATTGGTCCTGCTGCTGGACCGAGTTCTGGTATGCCGCCAGCTTCTGCAAACGCTGATGGACAGTCAGGAGGAGAAGGTGGCAGGCGTACTGGTTGGTCTTCATCAGATCCTACTCGTCGGAGAAACTCTGGACCTATTGCTAATGATGGAATGTTATCTAGGCAAAAAGGCCCACTTATGAATGACTCAACTGGATCTAAAGATGTTATGTTGCCAAGTTCTACTTTCTTCCGACCTGGTGGATCTGCAAGGCGAGGTGCTGTTTCAAGCAGCCGTGATGCAGTTGTTGGCAGTGAGACTGAGACCTCTCGTGAGTCTCGTCCTCTCACCGCGGATCCAAATAAGGGAGCACTCCGCAAAATCTCTGGTGCTCAGAGAAGTTCACCTATCATGTCATCTGAGCACAACCGAGCATCCTCTGGCAGAAACACATCAAATACAAAGAACTTGGAGTCAACTCTTAGAGGTATTGAGAGCCTGCATTTCAATGACGAGAGGGTACAGTATTAG 1335 0.4315 MNESARTENVKTKHPQLLYESRLYKILQGGNGIPNVKWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQIVTPPARAIGPAAGPSSGMPPASANADGQSGGEGGRRTGWSSSDPTRRRNSGPIANDGMLSRQKGPLMNDSTGSKDVMLPSSTFFRPGGSARRGAVSSSRDAVVGSETETSRESRPLTADPNKGALRKISGAQRSSPIMSSEHNRASSGRNTSNTKNLESTLRGIESLHFNDERVQY. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11528 444 PANTHER CASEIN KINASE-RELATED 7 395 - -
Seca3g11528 444 SMART serkin_6 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11528 444 SUPERFAMILY Protein kinase-like (PK-like) 10 258 IPR011009 -
Seca3g11528 444 MobiDBLite consensus disorder prediction 274 427 - -
Seca3g11528 444 Gene3D Transferase(Phosphotransferase) domain 1 2 275 - -
Seca3g11528 444 Pfam Protein kinase domain 9 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11528 444 MobiDBLite consensus disorder prediction 400 427 - -
Seca3g11528 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 92 104 IPR008271 GO:0004672|GO:0006468
Seca3g11528 444 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11528 444 MobiDBLite consensus disorder prediction 332 346 - -
Seca3g11528 444 MobiDBLite consensus disorder prediction 368 384 - -
Seca3g11528 444 MobiDBLite consensus disorder prediction 302 317 - -
Seca3g11528 444 CDD STKc_CK1_delta_epsilon 8 250 - -
Seca3g11528 444 FunFam CK1 family protein kinase 2 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11528 Seca-Chr3 263599442 263604058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11528 65 249 MAP Kinase Kinase Kinase AT5G58950 24.737 3.39e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca3g11528 Pkinase 1.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11528 K02218 - gmx:100778165 715.687