Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11526 ATGGCAGGCTTGGCCCCAGAAGGATCACAATTTGATGGTCGTCAATATGATGCTAAGATGAATGAATTGCTTTCATCTGATGGGCAAGATGAATTCTTCACCTCATATGATGAAGTCTATGATAGCTTTGATGCAATGGGATTACAAGAAAATCTTCTTCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATCGTTCCCTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAATCTGGAACTGGGAAGACCGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAACAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCAGGGCGTGTGTTTGACATGCTGAGGAGGCAGTCACTTCGCCCAGATTACATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTACTGCCAGGGAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATTCTGGTAAAGCGTGATGAACTGACCCTGGAGGGTATCAAACAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTAGAGACACTATGTGACCTCTATGAGACTCTGGCTATCACCCAGAGTGTCATTTTCGTGAATACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAACGATCACACAGTGTCAGCCACCCATGGTGACATGGATCAAAACACTAGGGATATCATCATGCGCGAATTCCGGTCTGGCTCTTCTCGAGTTCTGATTACCACTGACCTCCTGGCCCGTGGTATAGATGTGCAGCAAGTTTCTCTGGTCATAAACTATGATCTCCCAACCCAACCTGAGAACTATCTCCACCGCATAGGGCGTAGTGGTCGTTTTGGAAGGAAGGGTGTTGCTATAAACTTTGTTACATTGGATGATGCAAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGTCTGTAGAGGAGCTCCCATCAAATGTTGCTGATCTTCTCTGA 1245 0.4586 MAGLAPEGSQFDGRQYDAKMNELLSSDGQDEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVSVEELPSNVADLL. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11526 414 Gene3D - 250 414 IPR027417 -
Seca3g11526 414 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 242 IPR014001 -
Seca3g11526 414 SMART ultradead3 60 257 IPR014001 -
Seca3g11526 414 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 414 IPR001650 -
Seca3g11526 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 395 IPR027417 -
Seca3g11526 414 SMART helicmild6 294 375 IPR001650 -
Seca3g11526 414 FunFam Eukaryotic initiation factor 4A-III 249 414 - -
Seca3g11526 414 CDD SF2_C_DEAD 254 384 - -
Seca3g11526 414 Pfam Helicase conserved C-terminal domain 267 375 IPR001650 -
Seca3g11526 414 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 69 IPR014014 GO:0003724
Seca3g11526 414 Pfam DEAD/DEAH box helicase 66 227 IPR011545 GO:0003676|GO:0005524
Seca3g11526 414 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 398 - -
Seca3g11526 414 FunFam Eukaryotic initiation factor 4A-II 29 248 - -
Seca3g11526 414 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 188 196 IPR000629 -
Seca3g11526 414 Gene3D - 31 249 IPR027417 -
Seca3g11526 414 CDD DEADc_EIF4A 45 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11526 Seca-Chr3 263588472 263591685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11526 1 414 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11526 K03257 - gmx:100809395 802.742