Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11524 ATGGGGAATCAGAAGCAGAAATGGACGCAGGATGAAGAAGAAGCGCTTATCGCGGGTGTGGAAAAGTATGGTCCTGGAAAGTGGAAAAACATTCTCAAAGATCCTCAATTCGCCCCTTTCCTCACTTCCCGTTCTAACATCGACCTCAAGGATAAATGGCGAAATTTGAGTGTAAGTAACGGTACTCATGGGCCGAAAGAAAAATCTAGGGTTCCAAAGCTCAAAGCTGCTGCTGCTTCTTCTTGTGCTTCCGCTCCTACTCCTGCTGCCAGTTCCGCTCTTCAGAATGCTGCTACTTCTGCGCCTCATCAAACCGCATCTTCTGATGCTGCTGTCAATGATCCCTCTCAAAATGACCAAGATGTCAAAAATCCTCCAAGGTATAACGCCATGGTTTTTGAAGCTCTATCAACACTAAAAGATGCTAATGGATCCGACCTAAATTCCATTGTTAGTTTCATCGAGCAGCAAAAACATCAAGTTCCCCAAAATTTCAGAAAGGCACTGAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAGCTTGAAAAGGTAAGTGAAACTCTGCGATGTTTTTACCGAATATTGATTTGCATGTCATAG 603 0.4411 MGNQKQKWTQDEEEALIAGVEKYGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTHGPKEKSRVPKLKAAAASSCASAPTPAASSALQNAATSAPHQTASSDAAVNDPSQNDQDVKNPPRYNAMVFEALSTLKDANGSDLNSIVSFIEQQKHQVPQNFRKALSTRLRRLVSQGKLEKVSETLRCFYRILICMS. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11524 200 MobiDBLite consensus disorder prediction 52 75 - -
Seca3g11524 200 CDD H15 126 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca3g11524 200 PANTHER SINGLE MYB HISTONE 4 1 187 IPR044597 GO:0003691
Seca3g11524 200 MobiDBLite consensus disorder prediction 93 124 - -
Seca3g11524 200 SMART h15plus2 122 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca3g11524 200 FunFam Telomere repeat-binding factor 1 2 58 - -
Seca3g11524 200 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 124 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca3g11524 200 SUPERFAMILY "Winged helix" DNA-binding domain 125 187 IPR036390 -
Seca3g11524 200 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Seca3g11524 200 MobiDBLite consensus disorder prediction 93 125 - -
Seca3g11524 200 SMART sant 4 59 IPR001005 -
Seca3g11524 200 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Seca3g11524 200 Gene3D - 2 58 - -
Seca3g11524 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Seca3g11524 200 Pfam linker histone H1 and H5 family 126 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca3g11524 200 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Seca3g11524 200 Gene3D - 121 190 IPR036388 -
Seca3g11524 200 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11524 Seca-Chr3 263567766 263572790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11524 1 195 Single Myb Histone (SMH) Gene Family AT1G72740 51.269 1.10e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g11524 Linker_histone 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11524 K09422 - gmx:780537 270.396