LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g11508	ATGCCGCCGACTATTGTAGGTCCCACCGTCATTGCCATCAATGACGGCCGCAACAGCCAACAAGCCGTCAAATGGGCGGTGGATCACCTCCTGAAGAAGAACTCTTCCTGCACCCTTATTCATGTTCGCACCAAGCCTATCCATCATCATGATGTTGATGTTCCTAAAAACGGTCGTCCACCAACTGAAGATGAATTGCACCAACTCTTCCTTCCCTTTCGAGGATTTTGTGCTAGAAAAGGGATCGTGGCAACAGAGTTGGTCCTGCATGACATTGATATTCCGAGTGCCCTTACTGATTATGTCATTGAAAATTCTATCAGCCATATCGTTGTTGGTGCTTATGCTTCCCCCTGGAGTGCACTTATAAGGAGATTTAATAGAGATGTAGACGTGCCAACTAGCTTAGCAAAGTCTTTGCCAGAGTCTTGCACATTGCATGTTATATCAAAAGGAAAAGTACAAACTATCCGACCAACAGGTCATCCAGCTCCAGTTCCTCAGATTATTCAACCTCAGAATGTTGACGTCACACCAAATACATCTATGAAAAACATAGTCACTCTCTTGCAAAATGCTCCATTGGTTCACCCAAATAACCTTATTGCCAATATCCATGATTCTGAAGATATAAACAGAAAACCATTCAAAGATGCTGCCACTGCACCAGACTCTAAGAATGTTTGGGAATCTTTACGTGAAATGAAAGATGCTATACTAATGACATCACGAAAATCCAATGAAGATACCAATTCACCAAGAGGTCCAAGACTATCAGCTGGAAGCTCCTCATCACTAAATTCATCAAATCGAACCACTCCCAACAATAGTGACAGCTCAGGGCGACTTGGTCTTCCATTGGCTGATGGAAACCATGAAGTACTTGGAAACTCATCAGACAGTTCTAAGAGCAACTCTTTTCCAAAGCCCCTAATAAGCTTGGAGACAGAAATAAAGAAATTAAAACTAGAACTGAAGAAAACAACAGAGCAATATGGTATGGCTTGCAGAGAAGCTGCTTCAGCAAAACAGAAGGCAACGGAGCTTCAAAAATTTAGGCAAGAAAAAGAACGCAACGTTGAAAAAGCTAAGCTTGCTGAAGAGGCTGCATTGGCTTTAGCAGAAGTAGAGAGGCAAAAGGCCAAGGCAGCTATGGAGGCAGCAGAAGTGTCACAAATCCTAGCTGAAATGGAAACTGTAAAGAGAAAGCAAGCCGAAATAAGAGCCAAGCATGAAGAAGAAGAAAGGAGAAAAGCATTACATGAAGCTGTGGTTAATAGTATTCCATATAGAAGATACGATATTAAAGAGATTGAAGCTGCAACTAATAACTTTGACGATGCTCTGAAAATTGGTGAAGGAGGATATGGACCTGTTTTTAAAGGAGTGCTTGATCACACTGTTGTTGCCATTAAGGTCGTGAAACCAGACTTAGCCCATGGAGAGAGGCAATTTCAACAAGAGGTTCTTGTTCTAAGCACCATAAGACATCCGCACATGGTGCTCCTTCTAGGTGCATGCCCAGAGTTTGGATGCCTTGTGTATGAGTACATGGAATATGGCAGCTTAGAAGATCGTTTGTTCCAAAAAGATGACACTCCACCAATTCCATGGCAAACTCGTTTCAAAATAGCATCAGAGATTGCCACTGGCCTTCTTTTCCTTCACCAAGCAAAGCCTGAGCCTTTGGTGCACCGTGACATGAAGCCAGCAAACATTCTCTTAGACAGGAACTATGTGAGCAAAATCAGTGATGTGGGTTTGGCACGGCTTGTTCCACCTTCTGTAGCCAACAAAACCACTCAATACCGCTTGACAGGTGCAGCTGGAACATTTTGCTACATTGACCCAGAGTATCAACAAACAGGGTTGTTGGGTGTGAAATCAGACATATATTCATTAGGTGTGGTGCTGCTACAGATTATTACTGCAAAACATCCAATGGGTTTGTCCCTTTTGGTTGAGAAAGCTATCCAGACAGGGACTTTCAAAGAGATGCTTGATCCAAGAGTGGATTGGCCTATTGAAGAGACTTTGTCATTTGCTAGGTTGGCCTTAAAGTGTTGTGAGTTAAGAAAACGAGATAGACCAGATCTTGGTACTGTCATTTTGCCAGAGCTGGAACGAATATCAGAGATGTGGGACTGGGAGGAGTCACTCACATTCACGGAGTATAATTCTCTGCTTTTTTGA	2193	0.4282	MPPTIVGPTVIAINDGRNSQQAVKWAVDHLLKKNSSCTLIHVRTKPIHHHDVDVPKNGRPPTEDELHQLFLPFRGFCARKGIVATELVLHDIDIPSALTDYVIENSISHIVVGAYASPWSALIRRFNRDVDVPTSLAKSLPESCTLHVISKGKVQTIRPTGHPAPVPQIIQPQNVDVTPNTSMKNIVTLLQNAPLVHPNNLIANIHDSEDINRKPFKDAATAPDSKNVWESLREMKDAILMTSRKSNEDTNSPRGPRLSAGSSSSLNSSNRTTPNNSDSSGRLGLPLADGNHEVLGNSSDSSKSNSFPKPLISLETEIKKLKLELKKTTEQYGMACREAASAKQKATELQKFRQEKERNVEKAKLAEEAALALAEVERQKAKAAMEAAEVSQILAEMETVKRKQAEIRAKHEEEERRKALHEAVVNSIPYRRYDIKEIEAATNNFDDALKIGEGGYGPVFKGVLDHTVVAIKVVKPDLAHGERQFQQEVLVLSTIRHPHMVLLLGACPEFGCLVYEYMEYGSLEDRLFQKDDTPPIPWQTRFKIASEIATGLLFLHQAKPEPLVHRDMKPANILLDRNYVSKISDVGLARLVPPSVANKTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITAKHPMGLSLLVEKAIQTGTFKEMLDPRVDWPIEETLSFARLALKCCELRKRDRPDLGTVILPELERISEMWDWEESLTFTEYNSLLF.	731

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g11508	730	Coils	Coil	311	331	-	-
	Seca3g11508	730	MobiDBLite	consensus disorder prediction	243	309	-	-
	Seca3g11508	730	SUPERFAMILY	Protein kinase-like (PK-like)	423	702	IPR011009	-
	Seca3g11508	730	Pfam	Protein tyrosine and serine/threonine kinase	450	702	IPR001245	GO:0004672\|GO:0006468
	Seca3g11508	730	Gene3D	Transferase(Phosphotransferase) domain 1	518	723	-	-
	Seca3g11508	730	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	563	575	IPR008271	GO:0004672\|GO:0006468
	Seca3g11508	730	FunFam	Os07g0541700 protein	518	608	-	-
	Seca3g11508	730	PANTHER	OS02G0152300 PROTEIN	11	712	-	-
	Seca3g11508	730	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	10	118	-	-
	Seca3g11508	730	MobiDBLite	consensus disorder prediction	244	282	-	-
	Seca3g11508	730	SMART	serkin_6	445	710	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g11508	730	Gene3D	Phosphorylase Kinase; domain 1	423	517	-	-
	Seca3g11508	730	Coils	Coil	339	393	-	-
	Seca3g11508	730	Gene3D	HUPs	6	151	IPR014729	-
	Seca3g11508	730	ProSiteProfiles	Protein kinase domain profile.	445	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g11508	730	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	417	517	-	-
	Seca3g11508	730	MobiDBLite	consensus disorder prediction	294	309	-	-
	Seca3g11508	730	CDD	STK_N	8	152	-	-
	Seca3g11508	730	Coils	Coil	395	422	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g11508	Seca-Chr3	263373953	263378110	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g11508	4	725	Receptor kinase-like Gene Family	AT1G78940	47.739	0.0	618

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Seca3g11508		PK_Tyr_Ser-Thr	1.6e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g11508	-		-	gmx:100799611	928.317