Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11498 ATGAAGTACTCATGTAAGAAAGACTCTGGTCCATGTTCTGTCCATTTGACATCTCCTTGTGTTCTTGGATGCTCATCATGGGGGGCATCTTCTGAATCTGATGTGCAACGAACATCCATGTCCAAAACTTTGGCCATGAAAATGAGTTTTTTGCCACAACAATGTCATAAGGCTAAGCCACTGAGTTTTCAATTTCAAGACCAAGATTCTTCTTCAACTCAATCGACTGGTCAATCTTATCCAGAAGCCGGTCCAGCACAATCAGGTCAAATTTCTGTCCAATATAGCAATTCTTCTGCTTGTTCAACACTTAGCAAAACTGGGGAGAAGAATGTGGAAGGTCTCATCAGGTCATCTGTGGGGAGTCAGGATTTTACCTTCCCTCCTTCACAACTGGGTCACAACCAATCACTTGCGTATAATGCATTCCACCATGCTGAGCCATGCTTTAGTGGCCTACTAGCTGCTCCATATGGCCCACAGCCTAATATTCATCATGCTCAGCTAATAGGAATGGCTCCTGTTCGAATTCCTCTGCCACTTGATCTTTGTGAGGAACCCATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGACGGAGACAGTATCGTGCAAAGCTTGAAGCACAGAACAAACTCATCAAAGATCGGAAACCATATCTTCATGAGTCCCGCCATCTACATGCAGTGAAGAGAGCTAGAGGTGCTGGTGGACGTTTCCTGAATACCAAAAAGCTCCAAGAGTCAAAGCTTACTTCAACCAACCATGGCTTAGATACTTCCAACTGTACTCAGTTGAATCTGAGTGGAAATATGTCAGAATCTAAGATGCATCAAGTAGAAAACTACAGAGATGGTGCTTCCACAATTACTTGTTCTGATATCACAAGTGCATCTAATAGTGATGACATCTTCAGGCAACAGGAGTCAGACTACAGAATATGTGGTTACCATTCTCATATTGGAAGGAATATGCAGGTGCGCGTAAGGGGAGGAGCAGGAGAAGGTGCAATGGACTCGCGCTCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGTCGTCGAGCTGGTCTTATCAAAGCCCTCACCACCGATGTTGAAGATTTCTATAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATACGGGTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAGGTTCCACCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGACAAGGCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTTAAGGAGAAGTCATCAGTTTCAAACCACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGCAAGGGCTCCAGAATCTCAGCCTAGGCAGTCAAAGGCATTGCAATCAAAAGATGAGGATGAAGAACTGGATGAGCAAGATGATGATGAACATGGGGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCAAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCCCCTAA 1776 0.4443 MKYSCKKDSGPCSVHLTSPCVLGCSSWGASSESDVQRTSMSKTLAMKMSFLPQQCHKAKPLSFQFQDQDSSSTQSTGQSYPEAGPAQSGQISVQYSNSSACSTLSKTGEKNVEGLIRSSVGSQDFTFPPSQLGHNQSLAYNAFHHAEPCFSGLLAAPYGPQPNIHHAQLIGMAPVRIPLPLDLCEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKDRKPYLHESRHLHAVKRARGAGGRFLNTKKLQESKLTSTNHGLDTSNCTQLNLSGNMSESKMHQVENYRDGASTITCSDITSASNSDDIFRQQESDYRICGYHSHIGRNMQVRVRGGAGEGAMDSRSQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKARAPESQPRQSKALQSKDEDEELDEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11498 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 528 586 IPR013083 -
Seca3g11498 591 PANTHER CPG BINDING PROTEIN 346 590 IPR045104 GO:0006355|GO:0042393
Seca3g11498 591 Pfam PHD-finger 538 587 IPR019787 -
Seca3g11498 591 ProSitePatterns NF-YA/HAP2 subunit signature. 189 209 IPR018362 GO:0003677|GO:0016602
Seca3g11498 591 ProSiteProfiles Zinc finger PHD-type profile. 535 587 IPR019787 -
Seca3g11498 591 ProSitePatterns Zinc finger PHD-type signature. 538 584 IPR019786 -
Seca3g11498 591 SMART cbf3 183 244 IPR001289 GO:0003700|GO:0006355
Seca3g11498 591 MobiDBLite consensus disorder prediction 483 531 - -
Seca3g11498 591 SUPERFAMILY FYVE/PHD zinc finger 527 588 IPR011011 -
Seca3g11498 591 MobiDBLite consensus disorder prediction 66 89 - -
Seca3g11498 591 Pfam Alfin 349 477 IPR021998 GO:0006355|GO:0042393
Seca3g11498 591 CDD PHD_AL_plant 537 587 IPR044104 -
Seca3g11498 591 Gene3D - 184 245 - -
Seca3g11498 591 MobiDBLite consensus disorder prediction 488 513 - -
Seca3g11498 591 ProSiteProfiles NF-YA/HAP2 family profile. 184 244 IPR001289 GO:0003700|GO:0006355
Seca3g11498 591 SMART PHD_3 537 585 IPR001965 -
Seca3g11498 591 PRINTS CCAAT-binding transcription factor subunit B signature 218 241 IPR001289 GO:0003700|GO:0006355
Seca3g11498 591 PRINTS CCAAT-binding transcription factor subunit B signature 187 209 IPR001289 GO:0003700|GO:0006355
Seca3g11498 591 FunFam PHD finger alfin-like protein 530 586 - -
Seca3g11498 591 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 186 241 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11498 Seca-Chr3 263183948 263196469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11498 345 590 Alfin-like Transcription Factor Family AT3G42790 76.423 1.57e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Seca3g11498 Alfin 1.8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11498 K26274 K08064 gmx:100500765 492.656