Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11494 ATGTTAACTTGCATAGCGTGTTCGAAGCAGCTCAATAATGGATCTCTTCACCAAGAAGAAGATGAAGAAGCTGCGCAAACACCCAGCACCAAGCAAGCCATCAAGGCTCTCACTGCACAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCCTATAAGAATTGCAAGCCTTGTGCAGGATCTTCCAATGGTAACAAGAATAGAAAGTATGCTGACTCTGATATGGGCTCAGATTCAGCAAGGTTCCACTGGGCCTACCGCAGAACAGGGAGCTCCAATTCAACCCCAAGGATGTGGGGAAAAGAAATGGAAGCTAGACTGAAAGGGCTTTCCAGTGGGGAAGGAACACCAGCATCAGTGAGTGGACGTACTGAATCAGTAGTGTTCATGGAAGAGGATGAGCCCAAGGAATGGGTTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCTCAGGGTGGGAATGATCTGAAGCGGATACGGTTCAGTACATGTTTGTTTGAGAGTGATCACATGCTTTTCAAAGGCTGTTCAGATTCTAGATTGGCAGCATCTATCTTGTTTGTATTATGCCTCTTTGGAGGACCTCAGCTTTGTTCCCTTGTCAGTAATTCATGCTTGGCTGGTTTGATCAGTCGTGAAATGTTTAATAAATGGCAAGCTCAGAGGTGGTGGACAGAGAATTATGACAAGGTCATGGAGTTGTACAATGTTCAGAGGTTCAATCAGCAAGCAGTTCCTCTTCCAACCCCACCTAGATCTGAAGATGAGAGTTCAAAGATTGAATCTGCCAGGGATAGCCCTGTCACTCCTCCTCTTAGCAAAGAGCGTCTGCCCCGACATTTTCAGCACCCAATGGGAATGGGCTACTCCTCATCAGATTCACTGGATCACCACCAAATGCAACCTCACCCTTGCTATGAAACAAGCGGTCTAGCATCAACACCTAATCTTTCCACCATTAGTGCACCAAAGACTGAAAGATCATCCCTTGAAGGTTCTGTAAGGACAAGTTCATCAGGAGAGGGAGATCACTCAGGTGAGCTTTCAATCAGCAATGCCAGTGATATGGAAACTGAATGGGTTGAGCAGGATGAACCAGGAGTATACATCACTATCAGAGCACTGCCAGGTGGAACCAGAGAACTTAGGCGCGTCCGGTTCAGCCGAGAAAAGTTTGGAGAAATGCATGCCAGATTGTGGTGGGAAGAGAACCGTGCCAGGATACAAGAACAATACTTGTGA 1254 0.4681 MLTCIACSKQLNNGSLHQEEDEEAAQTPSTKQAIKALTAQIKDMAVKASGAYKNCKPCAGSSNGNKNRKYADSDMGSDSARFHWAYRRTGSSNSTPRMWGKEMEARLKGLSSGEGTPASVSGRTESVVFMEEDEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSTCLFESDHMLFKGCSDSRLAASILFVLCLFGGPQLCSLVSNSCLAGLISREMFNKWQAQRWWTENYDKVMELYNVQRFNQQAVPLPTPPRSEDESSKIESARDSPVTPPLSKERLPRHFQHPMGMGYSSSDSLDHHQMQPHPCYETSGLASTPNLSTISAPKTERSSLEGSVRTSSSGEGDHSGELSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRARIQEQYL. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11494 417 ProSiteProfiles BRX domain profile. 362 417 IPR013591 -
Seca3g11494 417 MobiDBLite consensus disorder prediction 248 359 - -
Seca3g11494 417 MobiDBLite consensus disorder prediction 310 359 - -
Seca3g11494 417 ProSiteProfiles BRX domain profile. 136 240 IPR013591 -
Seca3g11494 417 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Seca3g11494 417 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 417 IPR044532 -
Seca3g11494 417 Pfam Transcription factor regulating root and shoot growth via Pin3 215 239 IPR013591 -
Seca3g11494 417 Pfam Transcription factor regulating root and shoot growth via Pin3 361 416 IPR013591 -
Seca3g11494 417 Pfam Transcription factor regulating root and shoot growth via Pin3 136 172 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11494 Seca-Chr3 263133541 263138684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11494 1 417 Major Intrinsic Protein MIP AT1G31880 42.299 7.61e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11494 - - gmx:100805480 680.248