Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11488 ATGTATCTCATCCCTGGGATTTTGATCATTGGAACACTGGTAATTGCATTTACATTTTTCAGTCTCACTATGCTTGGATGGTGCACTAATACCAATCACATACCATCCCCTCCTACAGCAGGCTTATCTTTTGATGACAAGTTCTCTGTTTGCCAGAGTTTAGAGTCACATTCTGTTACATTCTTGTACAAGGAAGAAGAGGCTGCAGAAGGCAAAAACCAGACTGAATGTGTTATCTGCTTGACACCCTTTCAAGAAGAGGAAAGTGTTCGGAAACTTCACACTTGCAAGCATATATTCCATACATCTTGCATTGATAAGTGGCTTGGCTCTCATTCTGGCTGCCCTCTGTGCCGAACTCAGATTGACAAAGTAATTTCCCCAAATGGGATAGTGGGAAATGATCAGATGATTGTGGTCATTGTTAACTCTTAA 435 0.4115 MYLIPGILIIGTLVIAFTFFSLTMLGWCTNTNHIPSPPTAGLSFDDKFSVCQSLESHSVTFLYKEEEAAEGKNQTECVICLTPFQEEESVRKLHTCKHIFHTSCIDKWLGSHSGCPLCRTQIDKVISPNGIVGNDQMIVVIVNS. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11488 144 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 124 IPR044675 -
Seca3g11488 144 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Seca3g11488 144 Pfam Ring finger domain 76 119 IPR001841 -
Seca3g11488 144 SMART ring_2 77 118 IPR001841 -
Seca3g11488 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 125 IPR013083 -
Seca3g11488 144 SUPERFAMILY RING/U-box 76 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11488 Seca-Chr3 263076943 263077377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11488 7 144 C3H Transcription Factor Family AT5G17600 33.553 7.97e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11488 - - gmx:102661636 231.491