Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11487 ATGTACAAGCATCATTCCAATTTGCCAATCTTATTTGTCTGTCTCTTGTTTATTTCGAGGCTGACGTCAGACAATGTTTCTTCATATCCAGTGATATTTCTTTCTGGCCCTGCTCCTCAAATAAAACATGATCTCTTTGTTAGCTTCCGAGGTCCAGACATTCGGCAAGGTTTCCTTAGCCATTTGATTGAGGCTTTATCTCGAAAGCAAATTGATGCCTTTGTAGACAATAAGCTTCCGAGAGGAAATGAAATATCACACTCACTTCTTGCATCAATTGAAGCATCCTTCATTTCTTTGGTCATATTCTCACCAAACTATGCTTCTTCTCGTTGGTGCTTGGAGGAACTTGTGAAGATAATTGATTGCAGAGAAAAATATGGACAGATTGTGCTGCCTGTTTTCTACACAGTAGACCCTACAGATGTACGCCATCAAAAAGGGACTATTGGAAACGCATTTTCTGATCATGAAAAAAAGCATGGTTTGACCAAGGTGCTAGCTTGGAGATCTGCTTTGAAGGAATCGGCTAGTATCGAAGGATTTCATTCATCAAATTTCCTGAATGATGCTGAGCTTATTGATGAAATAGTTAAATGTGTGTTGATCAAGTTGGATCATACACACCGAGTTAACTCAAAAGAACTTGTTGGAATTGACAGACCAATCTCACATGTAGAATCATTGTTACAGTTAGAGGATGGAGATGTTCGGGCTATTGGAATTTGGGGCATGGGTGGTATTGGTAAAACAACAATTGCAGAACAAGTATTTAACAGACTATGTTCTAAATTCGAAAGTTGTTTTATGGCTAATATAAGAGAAGAGTCAGAAAGGCATGGAATAATCTCTTTAAAGAAAAAGCTTTTCTCCACTCTGTTAGAGGAACAAGATATGAAAATTGACATGATAAATGGATTGCCTCATTTAGTTGAAAGAAGGATTCGTCGTTTGAAGGTTCTTATTGTCCTTGATGATGTCAAAGAATCACAACAACTAGAAATTTTAGTTGGAGCACTTGATTGGTTTGGAGCTGGTAGTAGAATCATCATAACAACTAGAGATAAGCAAGTGCTTGCCAAAAAGGTTATTGATATATATAAGGTCAGGGCATTGGACTTTGATGAATCTTTTCAGCTTTTCAATTTGAATGCCTTTGAAAAAAATCATCTTGAAGTGGAGTACTATGAGCTATCAAAGAAGATGGTCAATTATGCCAAAGGGGTTCCATTAGTTCTTAAAGTTTTAGGCCATCTTCTTCGTGGGAAGGATAAAAAAATATGGGAAAGTCAGTTAGAGAGGCTTAAAAAAGTGCCAGTTAAAGGAGTTCATGATGTTATTAGATTGAGTTACAATGATCTTGATCGTGATGAGAAGAGCATCTTTTTGGATATTGCATGTTTTTTGGATGGATTGCATTTGAAAGTTGACAACATCAAACGGCTATTGAAAGATCGTGGTTATTCAGTGGATGTTGAGTTAGAAAGGCTGGAAGATAAAGCTCTTATAACTATTTCTCGAGATAATATTGTATCAATGCATAGCATTATACAAGAAACAGCTTGGGAAATTGTTCGTGAAGAATCCATTGAAGCCGAAGGGAGCGAGGCTATTAGAAGCATAGTCATTGACTTGTCGATAATTAAGGAGCTGCAGTTAAGCCCTGAAGCCTTTGCTAAGATGAGCAGACTACAACATCTGGAAATTTATAGTGTCCAAGTGTACTTAGACAGACCAACTCGGGGAATTACATCGGATCATGTGTATCTAATGTTCGACCAAGGATGTTCTCGCTACCTTAATGCTCGAGCCAAAGATCAGCCAAAGCTTCAAATTAAGGTTACGGCTGTGTCAGGAACACTGACATCACAGTACGTGCCGTTCCTGTTAAAGGGCTTCGGGGGGAGTGAAGCTATTAGAAGCATAGCCATCAACTGGTCCATAATTAAGAAGCTGCAGTTAAGTCCTCAAGTCTTTGCAAAGATGAGCAAATTGCAATATCTGGACATTTATGAGACTTGGATACTCTCCTTAATATATATTTTTTTGTCCATTAAAAAAAACGATAAGCTTCCGAGAGGAAATGAAATATCACACTCACTTCTTGCATCAATTGAAGCGTCCTTGATTTCTTTGGTCATATTCTCACAAAACTATGCTTCTTCCCGTTGGTGCTTGGAGGAACTTGTGAAGGTAATTGAGTGCAGAGAAAAATATGGACAGATTGTGCTGCCTGTTTTCTACACAGTAGACCCTACAGATGTACGCCATCAAAAAGGGACTATTGGAAATGCATTTGCTGAGCATGAAAAAAAGCATGGTTTGACCAAGGTGCTAGCTTGGAGGTCCGCTTTGAAGGAATCAGCTAATATCGAAGGATTTCATTCATCAAATTTTCTGAATGATGCTGAGCTTATTGATGAAATAATTAAACATGTGTTGATGAGGTTGAATCATGTTCGCCAAGTTAACTCAAAAGGACTGGTCGGAATTGGCAAACCAATTTCACAAGTTGAATCATTGTTACACTCAGAGGCAAAAGATGTCCGTGCTATTGGAATTTGGGGGATGGGTGGGATGGGTAAAACAACTATTGCAGAAGAAGTATTTAATAGATTGTGTTTTGAATATGACAATTGTTTTTTCATGGCTAGTGTAAGAGAAGAGTCAAGAAGGCATGGATTAATCTATTTAAAGAAAAAGCTTTTCTCTACTCTATTAGGGGAGCATGACTTGAAAATTGACACACCAAATGGATTGCCTCATTTTGTTGAGAGAAGGCTTCGTCGTATGAAGGTCCTCATTGTCCTTGATGATGTCAATGATTCACAGCAGCTAGAAACTTTAATTGGAACACTTGATTGGTTTGGAACAGGAAGCAGAATCATCATAACAACTAGAGATAAGCAAGTGCTTGCCAAAAAGGTTGTTGATATATATGAGGTCAGGGCATTGGACTTTGATGAATCTTTTAGGCTTTTCAATTTGAATGCCTTTGAAAAAAATCATCTTGAAGTGGAGTACTATGAGCTATCAAAGAAAATGGTCAATTATGCCAAAGGGGTTCCATTAGTTCTTAAAGTTTTGGGCCATCTTCTTCGTGGGAAGGATAAAAAAATATGGGAAAGTCAGTTAGAGAGGCTTAAAAAAGTGCAAATTAAAAAAGTTCATGATATTATTAGATTGAGTTACAATGATCTTGATCATGATGAGAAGAAGATATTTTTGGACATTGCATGTTTTTTACATGGATTGCATATGAGAGTGGACAACATAAAACTGCTGTTGAAAGATCGTGGTTATTCAGTGGATGTTGAGTTAGAAAGGCTTAAAGATAAAGCTCTTATAACCATTTCTCAAGATAATATTGTATCAATGCATAACATTATACAAGAAACAGCTTGGGAAATTGTTCGTGAAGAATCTATTGAAGACCCTGGAAATCAAAGTAGACTATGGGATTCTGATGACATATACCGAGTACTGAAAAATAACAAGGGGAGTGAAGCTATTAGAAGCATAGCCATCAACTGGTCCATAATTAAGAAGCTGCAGTTAAGTCCTCAAGTCTTTGCAAAGATGAGCAAATTGCAATATCTGGACATTTATAATAAAGGGTCTTGTATCTTGGATAAAGGTGGCTTGAATCTTACTCAAGGGCTTGAATATTTGCCAAATGAGCTCACATTTCTTCGTTGGGTGCATTATCCATTGGAATCCTTGCCGTCCAAGTTTTCTGGGGAAAAGCTTGTTGTACTGAACTTGCAGTATAGCAGAGTGAAGAAACTTTGGCATAAAGTGCCGGATCTTGTGAATTTAAAGATTCTTATACTCAGTTTATCCTCACAATTGGTGGAGTTTCCAGACTTGTCAAAGGCCACAAATCTTGCAGTAATAGATCTTCGTCTCTGTGTAAGATTGACAAGTGTGCATCCCTCTGTTTTTTCTCTCAACAAGCTCAACAAATTGGATCTAGGTGGATGCATTTCCCTTACAAGCCTTCCAAGCAATATCCATTTAAGCTCCCTTCGTTACCTCTCCCTAGCTGGTTGCCTTTCACTAAAGGAATTCTCAGTGACCTCAAAGAATATGAAGAAATTGAATCTACAACTCACAGGCATCAAAGAATTGCCCTCATCATTTGGACTTCAAAGCAAACTTGAGAAGCTACTTCTTGCATACACTTACATTCAGCACTTGCCTGAAAGCATCAAGCATCTTTCAAAGCTGCGACATTTAGATTTAAGGCATTGCAGGGAGCTTAGGAGTCTACCAGAGCTTCCATCATCACTACAAACACTAGATGCTAGTGGATGTGTATCACTTGAGACCATAACCTTCCCTTCAACTTTAACAGAACAACTGAAGGAAAACAAGAAAAGGGTTGCATTCTGGAATTGCCTGAAATTGGATCAACATTCTCTCAAGGCTATTGGGCTGAATGCACAAATTAACATGATGAAGTTTGCATACCATCATATATCCACATTTGGGCCCAATTATGGCACCTATGTGTATCCAGGAAGCAGTGTTCCAAATTGGTTGGTGTATAGAACAACAGAAAATTACATAACTGTTGATCTATCTTTTGTTGCACATTCCTCTGAACAGTTGGGCTTCATTTTTTGCTTCATTGTTCCAAAAGTCACATCAGAGGGTTTGATTTTGATATTTAACATCAATGCTGGTGAAGGGGAAGGTAATGGAATTAATGTGTACTTAGATAGGCCAAGTCGTGGGATTAAATCAGATCATGTGTATCTAATGTATGACAAGGGATGTTCTCACTACCTAATTAGCAGAGCCAAACATCAACCAAAGTTTAAAATTAAGGTTACAGCGGTTTCTGGAACACTGACATCACAGTACGTGCCTTTGTTGATACGAGGGTTCGGTCTCATCCCAATAAACACATCAGAATATTTCAATTTGATTCAGCAAATGGAATTGGCTGATGATCGTGCTCCGAGTATCACAATCTCATTATTGAGTGTTTTTTATAGCTTTTACTTGTATATTTTGTTACCATTATTCATAGAGCTACTCATAAAGTTTGATGTTTGA 5064 0.378 MYKHHSNLPILFVCLLFISRLTSDNVSSYPVIFLSGPAPQIKHDLFVSFRGPDIRQGFLSHLIEALSRKQIDAFVDNKLPRGNEISHSLLASIEASFISLVIFSPNYASSRWCLEELVKIIDCREKYGQIVLPVFYTVDPTDVRHQKGTIGNAFSDHEKKHGLTKVLAWRSALKESASIEGFHSSNFLNDAELIDEIVKCVLIKLDHTHRVNSKELVGIDRPISHVESLLQLEDGDVRAIGIWGMGGIGKTTIAEQVFNRLCSKFESCFMANIREESERHGIISLKKKLFSTLLEEQDMKIDMINGLPHLVERRIRRLKVLIVLDDVKESQQLEILVGALDWFGAGSRIIITTRDKQVLAKKVIDIYKVRALDFDESFQLFNLNAFEKNHLEVEYYELSKKMVNYAKGVPLVLKVLGHLLRGKDKKIWESQLERLKKVPVKGVHDVIRLSYNDLDRDEKSIFLDIACFLDGLHLKVDNIKRLLKDRGYSVDVELERLEDKALITISRDNIVSMHSIIQETAWEIVREESIEAEGSEAIRSIVIDLSIIKELQLSPEAFAKMSRLQHLEIYSVQVYLDRPTRGITSDHVYLMFDQGCSRYLNARAKDQPKLQIKVTAVSGTLTSQYVPFLLKGFGGSEAIRSIAINWSIIKKLQLSPQVFAKMSKLQYLDIYETWILSLIYIFLSIKKNDKLPRGNEISHSLLASIEASLISLVIFSQNYASSRWCLEELVKVIECREKYGQIVLPVFYTVDPTDVRHQKGTIGNAFAEHEKKHGLTKVLAWRSALKESANIEGFHSSNFLNDAELIDEIIKHVLMRLNHVRQVNSKGLVGIGKPISQVESLLHSEAKDVRAIGIWGMGGMGKTTIAEEVFNRLCFEYDNCFFMASVREESRRHGLIYLKKKLFSTLLGEHDLKIDTPNGLPHFVERRLRRMKVLIVLDDVNDSQQLETLIGTLDWFGTGSRIIITTRDKQVLAKKVVDIYEVRALDFDESFRLFNLNAFEKNHLEVEYYELSKKMVNYAKGVPLVLKVLGHLLRGKDKKIWESQLERLKKVQIKKVHDIIRLSYNDLDHDEKKIFLDIACFLHGLHMRVDNIKLLLKDRGYSVDVELERLKDKALITISQDNIVSMHNIIQETAWEIVREESIEDPGNQSRLWDSDDIYRVLKNNKGSEAIRSIAINWSIIKKLQLSPQVFAKMSKLQYLDIYNKGSCILDKGGLNLTQGLEYLPNELTFLRWVHYPLESLPSKFSGEKLVVLNLQYSRVKKLWHKVPDLVNLKILILSLSSQLVEFPDLSKATNLAVIDLRLCVRLTSVHPSVFSLNKLNKLDLGGCISLTSLPSNIHLSSLRYLSLAGCLSLKEFSVTSKNMKKLNLQLTGIKELPSSFGLQSKLEKLLLAYTYIQHLPESIKHLSKLRHLDLRHCRELRSLPELPSSLQTLDASGCVSLETITFPSTLTEQLKENKKRVAFWNCLKLDQHSLKAIGLNAQINMMKFAYHHISTFGPNYGTYVYPGSSVPNWLVYRTTENYITVDLSFVAHSSEQLGFIFCFIVPKVTSEGLILIFNINAGEGEGNGINVYLDRPSRGIKSDHVYLMYDKGCSHYLISRAKHQPKFKIKVTAVSGTLTSQYVPLLIRGFGLIPINTSEYFNLIQQMELADDRAPSITISLLSVFYSFYLYILLPLFIELLIKFDV. 1688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11487 1687 Gene3D - 815 980 IPR027417 -
Seca3g11487 1687 Gene3D - 208 367 IPR027417 -
Seca3g11487 1687 SMART till_3 42 179 IPR000157 GO:0007165
Seca3g11487 1687 SMART till_3 655 791 IPR000157 GO:0007165
Seca3g11487 1687 Gene3D - 40 207 IPR035897 -
Seca3g11487 1687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 815 1078 IPR027417 -
Seca3g11487 1687 SUPERFAMILY "Winged helix" DNA-binding domain 443 529 IPR036390 -
Seca3g11487 1687 SUPERFAMILY L domain-like 1176 1462 - -
Seca3g11487 1687 Pfam NB-ARC domain 839 1066 IPR002182 GO:0043531
Seca3g11487 1687 Pfam NB-ARC domain 228 448 IPR002182 GO:0043531
Seca3g11487 1687 Gene3D Ribonuclease Inhibitor 1162 1360 IPR032675 -
Seca3g11487 1687 ProSiteProfiles TIR domain profile. 654 817 IPR000157 GO:0007165
Seca3g11487 1687 SUPERFAMILY Toll/Interleukin receptor TIR domain 39 181 IPR035897 -
Seca3g11487 1687 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 689 1441 IPR044974 GO:0006952
Seca3g11487 1687 Gene3D Ribonuclease Inhibitor 1361 1500 IPR032675 -
Seca3g11487 1687 ProSiteProfiles TIR domain profile. 41 205 IPR000157 GO:0007165
Seca3g11487 1687 PRINTS Disease resistance protein signature 851 866 - -
Seca3g11487 1687 PRINTS Disease resistance protein signature 1019 1033 - -
Seca3g11487 1687 PRINTS Disease resistance protein signature 927 941 - -
Seca3g11487 1687 PRINTS Disease resistance protein signature 1405 1421 - -
Seca3g11487 1687 SUPERFAMILY Toll/Interleukin receptor TIR domain 688 793 IPR035897 -
Seca3g11487 1687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 465 IPR027417 -
Seca3g11487 1687 FunFam Disease resistance protein (TIR-NBS-LRR class) 39 207 - -
Seca3g11487 1687 Gene3D - 670 814 IPR035897 -
Seca3g11487 1687 Pfam TIR domain 688 829 IPR000157 GO:0007165
Seca3g11487 1687 Pfam TIR domain 42 215 IPR000157 GO:0007165
Seca3g11487 1687 Gene3D - 371 455 IPR042197 -
Seca3g11487 1687 Gene3D - 984 1068 IPR042197 -
Seca3g11487 1687 SUPERFAMILY "Winged helix" DNA-binding domain 1054 1163 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11487 Seca-Chr3 263019556 263036701 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11487 43 570 WRKY Transcription Factor Family AT4G12020 30.616 2.01e-61 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11487 - - gmx:100802823 1380.16