Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11486 ATGAGGAATCGTCAATCCAATTATGGCATATTCTTCTTCTTCTTCTTCTTCTCAAATCAAGCATGTTTACTTGCTTGTCTCTTGCTTATAATTTCGAAATTGACGGGTACTGTAATGGCAAACATAACGGCATCAAACAACTGTTATTCTTCGTATCCAGTGATCTATGTTTCTAGCCCTGTTCCTCAAATAAAGTATGATGTCTTTGTTAGCTTTAGGGGTGATGACATCCGCAAAGGATTACTTAGCCATGTGTTGGATGCTTTGTCTCGAAAGCAAATTGTTGCCTTTTCAGATAACAAGCTTGAGAAAGGAGATGGAATTTCAGAGGCACTTCTTGGAGCAATTGAAAGATCATCGATTTCACTGGTCATATTCTCACCAGACTTTGCATCTTCGCATTGGTGTTTGGATGAGGTTGTGAAAATAGCAGAGTGCAGAAGAAAAAATGGACAGATTCTATTACCAGTTTTCTACCAAGTAGATCCCACAGTTGTACGCCATCAAAAGGGTACTTATGGAAATGCATTGGAACAACATTTATTAATAAAGAACTATAGCTCGAGCAGGGTACAAACCTGGAAATCTGCTTTGGGGGAATCTGCCAATATATCAGGAATTGTTTCATCAGATTATCCGAATGATGCTAAGCTTGTTGAAGAAATAGTTAAAGAAGTGTCAACAAATTTGAAACATGTACAACAAGTTAGTTCAAAAGGACTTGTTGGAATTGAAAAGCCAATTTCACATGTAGAATCATTGTTACATTTGGAGTCAGGAGGTGTTCATGTTATAGGAATTTGGGGTATAGGTGGTATTGGTAAAACAACAATTGCAGAAGAAGTATTTAATAGACTAAGTTCTAAATTCGAAAGTTGTTGCTTTATGGCTAATGTAAGAGAAGAGTCTGAAAGACAAGGACTAATCTCTTTAAAGAAAAAGCTTTTTTCCACTCTGTTAGGGGAACAAGATTTGCAAATTGACACAATAAATGGATTGCCCAATTTTGTTGAAAGAAGGATTCGTCGTTTGAAGGTTCTTATTGTCCTTGATGATGTCAATGATTCACAACACCTTGAAATTTTAGTTGGAACACTTGATTGGTTTGGATCAGGCAGTAGAATCATCATAACAACCAGGGATAAGCAAGTGCTTGCTGGAAAGGTTAATGATATACATGAGGTTAGTCCATTGGACTCTGATGAATCTTTTCGGCTTTTCAATTTGAATGCCTTTAAAGAAAATCACCTTGCAATGGAGTACTATGAACTAGCAAAGAAGATGGTTGATTATGCCAAAGGTGTTCCATTAGTTCTTAAAGTTTTAGGCCACCTTCTTCATGGAAAAGGTGAAGATATATGGAAAAGCCAATCAATGATGCTTAAAAAAGTGCAAATTAAAGAATTTCATAACGTTCTTAGGCCTAGTTACAATGATCTTCATCATAATGAGAGGAGGATATTTTTGGATATTGCATGTTTTTTTGATGGATTGAATTTGAAAGTTAATGACATAAAACGGTTACTGAAAGATCGTGAGTATTCAGTGACTATGGGATTAGAAAGGCTAAAAGATAAAACCCTAATAACCATTTCTCAAGAGAATATTGTATCAATGCATGACCTTATTCAAGAAATGGCTTGGGAGATTGTCCGGGAAGAATCTATTGAAGACCCTGGAAAACGAAGTAGATTATTAGATCCTGATGACATTTATCAAGTACTGAAATATAACAAGGGGAGTGAAGCCATTAGAAGCATGGTCGTCAACATGACTATAATTAAGCAGCTACAGTTAAGCCCTCAAGTGTTTGATAAAATGAGCAATCTACAATTTTTGGATATTTATGCTATAGGGTCTCATAGTTTCCTCCATGATGATGAAAGGGGTTTGTATCTTCCTCAAGGGCTTGAATCACTGCCTACTGAACTAAGATATCTTCGTTGGGCATATTACCCTTTGGATTCCTTGCCATCCAAGTTTTCTGCTGAAAAACTTGCCGAGTGA 2007 0.3642 MRNRQSNYGIFFFFFFFSNQACLLACLLLIISKLTGTVMANITASNNCYSSYPVIYVSSPVPQIKYDVFVSFRGDDIRKGLLSHVLDALSRKQIVAFSDNKLEKGDGISEALLGAIERSSISLVIFSPDFASSHWCLDEVVKIAECRRKNGQILLPVFYQVDPTVVRHQKGTYGNALEQHLLIKNYSSSRVQTWKSALGESANISGIVSSDYPNDAKLVEEIVKEVSTNLKHVQQVSSKGLVGIEKPISHVESLLHLESGGVHVIGIWGIGGIGKTTIAEEVFNRLSSKFESCCFMANVREESERQGLISLKKKLFSTLLGEQDLQIDTINGLPNFVERRIRRLKVLIVLDDVNDSQHLEILVGTLDWFGSGSRIIITTRDKQVLAGKVNDIHEVSPLDSDESFRLFNLNAFKENHLAMEYYELAKKMVDYAKGVPLVLKVLGHLLHGKGEDIWKSQSMMLKKVQIKEFHNVLRPSYNDLHHNERRIFLDIACFFDGLNLKVNDIKRLLKDREYSVTMGLERLKDKTLITISQENIVSMHDLIQEMAWEIVREESIEDPGKRSRLLDPDDIYQVLKYNKGSEAIRSMVVNMTIIKQLQLSPQVFDKMSNLQFLDIYAIGSHSFLHDDERGLYLPQGLESLPTELRYLRWAYYPLDSLPSKFSAEKLAE. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11486 668 Gene3D - 477 549 IPR036388 -
Seca3g11486 668 SMART till_3 65 204 IPR000157 GO:0007165
Seca3g11486 668 PRINTS Disease resistance protein signature 432 446 - -
Seca3g11486 668 PRINTS Disease resistance protein signature 264 279 - -
Seca3g11486 668 PRINTS Disease resistance protein signature 340 354 - -
Seca3g11486 668 Gene3D - 397 476 IPR042197 -
Seca3g11486 668 Pfam TIR domain 65 241 IPR000157 GO:0007165
Seca3g11486 668 Gene3D - 63 228 IPR035897 -
Seca3g11486 668 Gene3D - 229 392 IPR027417 -
Seca3g11486 668 FunFam Disease resistance protein (TIR-NBS-LRR class) 62 232 - -
Seca3g11486 668 ProSiteProfiles TIR domain profile. 64 230 IPR000157 GO:0007165
Seca3g11486 668 SUPERFAMILY Toll/Interleukin receptor TIR domain 59 206 IPR035897 -
Seca3g11486 668 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 66 667 IPR044974 GO:0006952
Seca3g11486 668 Pfam NB-ARC domain 253 477 IPR002182 GO:0043531
Seca3g11486 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 491 IPR027417 -
Seca3g11486 668 SUPERFAMILY "Winged helix" DNA-binding domain 468 576 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11486 Seca-Chr3 263008739 263013971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11486 59 668 WRKY Transcription Factor Family AT4G12020 31.331 8.12e-88 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11486 - - gmx:100802823 786.949