Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11483 ATGTGTTTGATTGGAAGCACAATGGATGCATCTTTAAGGTCTGCTACTGAACAAGGGAAAGAAAAGCATCGTCCAATACTAGGAAGCACAACTGAGATACGGCAGGAATTGAGGCCAAAAAGGGCAGATCCTCCAGAGGACAATATTGTTACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGGGCATGGACTCTTGTTGAGGTAATGAAATTGGTGGAAGGTGTGTCACGGTGTGGAGCAGGGAGGTGGTCTGAGATCAAACGACTCTCCTTTTCGTCATACTCATATCGCACCTCAGTTGATCTTAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCACAGGCACCTGCAGATGATGGGATGAATTCGCGGAAGCATGGTACAGTTCCGATTCCAGAGCCAATTTTAGTACGTGTAAGAGAGCTTGCTGAGTTGAATTCTCAGGTGCCTCCAAACAAATTAACAGGTGGTGCAGGGAATGTGCATGGTCATGGAGATAGATCAGGGTACTTGTAG 534 0.4625 MCLIGSTMDASLRSATEQGKEKHRPILGSTTEIRQELRPKRADPPEDNIVTVPTAKGGMRRKHHRAWTLVEVMKLVEGVSRCGAGRWSEIKRLSFSSYSYRTSVDLKDKWRNLLKASFAQAPADDGMNSRKHGTVPIPEPILVRVRELAELNSQVPPNKLTGGAGNVHGHGDRSGYL. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11483 177 Gene3D - 54 161 - -
Seca3g11483 177 ProSiteProfiles Myb-like domain profile. 67 114 IPR001005 -
Seca3g11483 177 MobiDBLite consensus disorder prediction 153 177 - -
Seca3g11483 177 CDD SANT_TRF 65 115 - -
Seca3g11483 177 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 118 IPR017930 -
Seca3g11483 177 Pfam Myb-like DNA-binding domain 66 114 IPR001005 -
Seca3g11483 177 SMART sant 63 116 IPR001005 -
Seca3g11483 177 MobiDBLite consensus disorder prediction 1 28 - -
Seca3g11483 177 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 24 161 - -
Seca3g11483 177 SUPERFAMILY Homeodomain-like 61 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11483 Seca-Chr3 262991302 262993591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11483 65 114 Single Myb Histone (SMH) Gene Family AT1G15720 48.000 4.20e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g11483 Myb_DNA-binding 8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11483 - - tpra:123883109 249.21