Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11476 ATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCTTTGATAGCAAAGAGGTTACCGGGACGAACAGACAATGAAATCAAGAACTACTGGAATACTAATCTGTCAAAGAAGTTACAGAAACAGAAATGTGAAGAACAGAAAACCAAACAGAAAAAAATCCATGTACCACCTGAGGCTCCACGGCCTAGGAGGGTTACTCAATGCAATAAAAGAAGAATTTTGGAGAATAATGGGTGTGACTCTAATGATAGAGATCCTTCAAAAAAAATAGAGGGCAATGATGAGGCTTCAATCACTGATTTCCTCATTGATATTGATCAAAACCAAATGCTGATTGCTGATGACTCCTCCAACTCAAAGCTCCCACAAATCAACAAGGAGAGTACTCCTACCTCATCACTTAATTCTGATCATTATTGTCACCCCTTATCAGAGAAATTTGACCCTCTGGAGACCCTTTTGGATGTGGAGCTCAAGAAGATGGCTTCCTTTCTTGGACTAGAAAGTAATTGA 519 0.395 MIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKQKCEEQKTKQKKIHVPPEAPRPRRVTQCNKRRILENNGCDSNDRDPSKKIEGNDEASITDFLIDIDQNQMLIADDSSNSKLPQINKESTPTSSLNSDHYCHPLSEKFDPLETLLDVELKKMASFLGLESN. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11476 172 ProSiteProfiles Myb-like domain profile. 1 36 IPR001005 -
Seca3g11476 172 Gene3D - 1 59 - -
Seca3g11476 172 Pfam Myb-like DNA-binding domain 2 36 IPR001005 -
Seca3g11476 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 40 IPR017930 -
Seca3g11476 172 MobiDBLite consensus disorder prediction 47 95 - -
Seca3g11476 172 SUPERFAMILY Homeodomain-like 2 44 IPR009057 -
Seca3g11476 172 Coils Coil 33 53 - -
Seca3g11476 172 SMART sant 1 38 IPR001005 -
Seca3g11476 172 Coils Coil 169 172 - -
Seca3g11476 172 CDD SANT 1 36 IPR001005 -
Seca3g11476 172 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 115 - -
Seca3g11476 172 MobiDBLite consensus disorder prediction 116 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11476 Seca-Chr3 262908969 262909601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11476 1 79 MYB Transcription Factor Family AT5G14750 54.878 8.26e-22 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g11476 Myb_DNA-binding 5.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11476 K09422 - gmx:547568 182.185