Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11475 ATGGGAAGAAGTCCTTGTTGTTCTAAGGAAGGCTTAAACAAAGGAGCATGGACAGCTACTGAAGACAAGATTCTCACAGAATACATTAAGATTCATGGCGAAGGAAAATGGAGACACCTTCCCAAAAGAGCAGGTCTCAAGAGATGTGGGAAAAGTTGTAGGCTAAGATGGTTGAATTATTTGAGGCCCGGCATTAAAAGAGGAAATATTACTAATGATGAAGAGGAACTTATAATCAGGCTTCACAACCTTCTTGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTACTGGAACACCAACATTGGAAGGAAGCTTCAAAATGGAACCATTAATATTGCAAGTGGTGCACGGAACTCATCACTTCAACAAGAACAACGAAACATGAAACAAAGTACACAAGATCAGTGGCACTATACACAAAACAATAAGGGTTCTTCTTGTTATGTGGTCCAGACAAAAGCAACAAGGTGGAGTGCTAAGGCCACAATCATCACTCAACAAAATGAAGGGGTAGAGAGCAATGTCCACCTTGATAACAAAATGAACAAGGGAGGATCACCACCATTGTCTTCACCTTCAGACAATAACAACAATGTCAATGTCAATGTTGACCCTTTGGATTTCATGGCAGATTTTGAGATGGATGGCAATTTCTTTTCGGAGCTTCTCAAGATGGATATACCTAATTCAGAACCATCTTGTTTGGAAAATAAGATACACAAGATAGAAGATCATAATGGTGGTAACCCTAGCACACTTGACAAGGGCCGTTTATCTCCAAAATCATCCAATGATACTCCCAGCTGCCCCTTCCTTTGGGCTGATTCATTTTCCTATGATACAGGTTTTGATTTTCAACCAATGGCAACTTTTGTCGAGTCCGGATTTGATTGGATTTGA 933 0.4051 MGRSPCCSKEGLNKGAWTATEDKILTEYIKIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTINIASGARNSSLQQEQRNMKQSTQDQWHYTQNNKGSSCYVVQTKATRWSAKATIITQQNEGVESNVHLDNKMNKGGSPPLSSPSDNNNNVNVNVDPLDFMADFEMDGNFFSELLKMDIPNSEPSCLENKIHKIEDHNGGNPSTLDKGRLSPKSSNDTPSCPFLWADSFSYDTGFDFQPMATFVESGFDWI. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11475 310 Gene3D - 14 66 - -
Seca3g11475 310 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g11475 310 Gene3D - 70 149 - -
Seca3g11475 310 CDD SANT 16 61 IPR001005 -
Seca3g11475 310 MobiDBLite consensus disorder prediction 252 275 - -
Seca3g11475 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca3g11475 310 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca3g11475 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca3g11475 310 FunFam MYB-related transcription factor 13 66 - -
Seca3g11475 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca3g11475 310 CDD SANT 71 112 IPR001005 -
Seca3g11475 310 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Seca3g11475 310 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g11475 310 SMART sant 13 63 IPR001005 -
Seca3g11475 310 SMART sant 66 114 IPR001005 -
Seca3g11475 310 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11475 Seca-Chr3 262890315 262892207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11475 1 199 MYB Transcription Factor Family AT2G16720 50.000 9.48e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g11475 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11475 K09422 - gmx:100809225 386.341