Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11473 ATGAGCAACTGGTTGGGATTCTCTCTGACTCCACACCTGAGGATTGATGAAGAATTTGGGAGAGAAAGCCAAGACCGTGGAGGTGGAGGTGGAGGTGGAGGAGGAGGAGGCTATCCTTCTTCTCATCCTCACTTGTCTCCTCCTCCTCACTTGTCTGTCATGCCTTTGCGCTCTGATGGTTCACTTTGTGTTGCTGACTCCTTTAGGCACTCTGAAGAATGGAGATATGATAATGCAATAGGTGGAGGAAATTCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTGGGTTGTTACTCAAACTCTCCCCTGGCTGAAACCAAAGTCTTCTGCCAAGGCTCCCAACATGACCAAAACCAGAATAATATTTCCAAAATCAATGTTAATGTGGCCCCAAGCTTTTGCACCAATACTGAAATTGAAACTGGGGAGAATCTCACACACCCTTCTCCCTTGCTCCACTCTTTCCATGCATATAGTGATAACCCACATGCCCTCATCCCCAACAATACCATGTACAAGTCCTGGTTGGCTCAAACTCAGTTTTCTGATGGAAAACCTTCAGCTGAGGCAAATGGGTGTAATTTCCAATCTCTGTCCTTGACTATGAGCCCCAGTGTACAAAATGGGGTGGGTGCAATTTCCCCTGTTCCAGTCAATGAAGACACTCGTAAAAGGTCCTTGGCAAAATCTCATGCTAGGGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTATTATTAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTGGAAGAGATGAAGCACATGACCAGACAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGCGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGTATAGGAAGGGTTGCAGGGAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAAGTATGATGTGAAGAGAATTTGCTCAAGCTCAACTCTAATTGCAGGGGATCTTGCGAAACGGTCTCCAAAAGACACAGCTCCAGCCACTGCTGAGGACTCAAATGCATCTGGTTCATCTGCACCTTCTCAGCCACCTCCTTTGGCCATAACTGAAGGTGAACATTCTGATGAGTTGTCCAACATGGTGTGGAATGCCAACAGTGATGAGCAACTACAGAGTGAGTGTGGAAACACCAATGTCACTGAATCATCACAACAGGTTTCACCAAGCAACAAGAATGCAATGAACCCTCAAAGCCCCAAGAGTTCTGTGGGACTACCAAATGAGTTTGGAGTGAGTGGAGGAGCAGATTATGGACATGGGTACTTCACCCTGCATGGACCAAAATATGATGATGATGGAAGCAATGAAAATGACCACATGAACACCAACAGACTTGGATTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTATGGAATGAATGA 1731 0.4483 MSNWLGFSLTPHLRIDEEFGRESQDRGGGGGGGGGGGYPSSHPHLSPPPHLSVMPLRSDGSLCVADSFRHSEEWRYDNAIGGGNSNEEGPKLEDFLGCYSNSPLAETKVFCQGSQHDQNQNNISKINVNVAPSFCTNTEIETGENLTHPSPLLHSFHAYSDNPHALIPNNTMYKSWLAQTQFSDGKPSAEANGCNFQSLSLTMSPSVQNGVGAISPVPVNEDTRKRSLAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVLLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISKYDVKRICSSSTLIAGDLAKRSPKDTAPATAEDSNASGSSAPSQPPPLAITEGEHSDELSNMVWNANSDEQLQSECGNTNVTESSQQVSPSNKNAMNPQSPKSSVGLPNEFGVSGGADYGHGYFTLHGPKYDDDGSNENDHMNTNRLGLGLVNQVPMFALWNE. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11473 576 MobiDBLite consensus disorder prediction 20 53 - -
Seca3g11473 576 ProSiteProfiles AP2/ERF domain profile. 251 317 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 MobiDBLite consensus disorder prediction 484 520 - -
Seca3g11473 576 FunFam AP2-like ethylene-responsive transcription factor ANT 250 319 - -
Seca3g11473 576 Gene3D AP2/ERF domain 353 413 IPR036955 GO:0003700|GO:0006355
Seca3g11473 576 Gene3D AP2/ERF domain 250 319 IPR036955 GO:0003700|GO:0006355
Seca3g11473 576 ProSiteProfiles AP2/ERF domain profile. 353 411 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 Pfam AP2 domain 251 309 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 Pfam AP2 domain 352 403 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 SUPERFAMILY DNA-binding domain 250 319 IPR016177 GO:0003677
Seca3g11473 576 CDD AP2 352 413 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 PRINTS Ethylene responsive element binding protein signature 393 413 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 MobiDBLite consensus disorder prediction 484 523 - -
Seca3g11473 576 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 495 - -
Seca3g11473 576 CDD AP2 250 319 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 FunFam AP2-like ethylene-responsive transcription factor 352 413 - -
Seca3g11473 576 SUPERFAMILY DNA-binding domain 352 413 IPR016177 GO:0003677
Seca3g11473 576 MobiDBLite consensus disorder prediction 432 465 - -
Seca3g11473 576 SMART rav1_2 353 417 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 SMART rav1_2 251 323 IPR001471 GO:0003700|GO:0006355
Seca3g11473 576 MobiDBLite consensus disorder prediction 441 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11473 Seca-Chr3 262874113 262878439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11473 1 436 AP2-EREBP Transcription Factor Family AT1G72570 50.628 2.98e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca3g11473 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11473 K09285 - gmx:100805489 930.628