Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11471 ATGATGAGTGCAAATGCAAGAAATAGGTCCCCTTTCACAGCAACTCAGTGGCAAGAACTTGAACAACAAGCTCTTGTTTTCAAATACATGGTTACAGGAACCCCTATTCCACCAGATCTCATCTACTCTATCAAAAGAAGCCTAGACACTTCAATGTCTTCAAGGCTCTTCCCACATCACCCAATTGGGTGGGGATGTTTTGAAATGGGTTTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCATCAACAAGCACCGCCACAAACACCTCCCAAACAAACCCAACCTCTTATAACAGAAACCTTTCCTTGACCAACCCCAACATAACTCCACCCTCTTCTTTCCCTTTCTCTCCACTGCCCTGTGACTCCCAACCCTTTTCCCAATCTTACCAAAACTCTTCTCTAAATCCCTTCTTTTACTCCCAATCAACCTCTTCTAGACCCCCTGATTCTGATTTTCCACCTCAAGATGCCACTACCCACCAGCTATTTATGGACTCTGGGTCTTATTCTCAGGAAGACAAGGATTATAGGCATGTTCATGGAATAAGGGAGGGTGTGGATGAGAGAGCTTTCTTCCCTGAAGCTTCAGGGTCTTCTAGGAGCTATCCTGACTCATATCAGCAGCTATCAATGAGCTCTTACAAGCCCTATTTAAACTCCCATTTTCAGGACATCAATGATAATCCAAGACAGCAAGAGCAGCACTGCTTTGTTTTGGGTACTGATTTCAAATCAACAAGACCAAGCAAAGAGAAAGAAACTGAAACAACTCAAAAATCCCTTCACCACTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAATTCCAGAATCCCAACCGATGAATGA 996 0.4438 MMSANARNRSPFTATQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSMSSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSSTSTATNTSQTNPTSYNRNLSLTNPNITPPSSFPFSPLPCDSQPFSQSYQNSSLNPFFYSQSTSSRPPDSDFPPQDATTHQLFMDSGSYSQEDKDYRHVHGIREGVDERAFFPEASGSSRSYPDSYQQLSMSSYKPYLNSHFQDINDNPRQQEQHCFVLGTDFKSTRPSKEKETETTQKSLHHFFGEWPPKNTDSWLDLASNSRIPTDE. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11471 331 MobiDBLite consensus disorder prediction 317 331 - -
Seca3g11471 331 MobiDBLite consensus disorder prediction 284 331 - -
Seca3g11471 331 MobiDBLite consensus disorder prediction 117 151 - -
Seca3g11471 331 MobiDBLite consensus disorder prediction 160 202 - -
Seca3g11471 331 MobiDBLite consensus disorder prediction 103 202 - -
Seca3g11471 331 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca3g11471 331 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Seca3g11471 331 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca3g11471 331 Pfam WRC 77 119 IPR014977 -
Seca3g11471 331 PANTHER GROWTH-REGULATING FACTOR 5 10 319 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca3g11471 331 MobiDBLite consensus disorder prediction 287 302 - -
Seca3g11471 331 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11471 Seca-Chr3 262831970 262834724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11471 3 309 GRF Transcription Factor Family AT3G13960 41.304 1.11e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca3g11471 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11471 - - gmx:100806024 582.408