Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11470 ATGTCCATGTTCGAAGAAAATGAGACATCTATGGGTTTGGACGATATAACATCTCAACAGGGTGACGATTATGACGGTAGTCGAGGTCCATATGATGATGCAATTGGGTTTGACGAAGGTGAAGAATTCTTAAGTGAAGAAAGTGTGCAAGATGATTGTTTTGAAGATGTTATTATGATAGATCATTTTAATGATATTAAGAAGATTGATATGAAAAATACCAGTGAAGATGATCTTCGTAAATATGATTTTGCCGATCTAGATGTGGCCCACGAATTCTATAGATGGTATGGTAGGTCGAATGGGTTCTCTATTCGTAAAAACAATGTAGTACTGAACAGTAAGAGTGACATTTTGCAGCAAACATTTATTTGTTCTGCACAGGGACATAGAAGGGCTAGGCGTTCCACAAGAAGTTCTAAAAAGAGACAATTGAAACCGCTAACGAGGTTTGATTGTAAAGCAATGTTTTGTGTTCACATCAACGTTAACTCAGGCCGATGGTATGTGACGATATTTGATGATAGTCACAATCACAGATTGTTGGAAGAACAACATTGTGGCATGTTACCAACATATAGAAATAAGACAAAATCTGACATTATGCAGATTAACAATTTTAGAGAAGTTGGGATAAGACCCCCTCATATCTATGGTTCATTTGCTAGGCAATCAGGGGGCTACCAGAAGATTGGATTTCTGAAGAAAGATATTTATAATGAGATAGGCAGACAAAGACAACAACAAGCTTCTGATGCTAGTGGTGCTCTGGAGTATCTTCGACAGTTGCGGTTGAAAGACAATTTGATGTTCTACAAACACATAACAGACGAGGATGAGAGACTCCGGCACCTATTCTGGTGTGATGGGGAAAGCCAAATGAACTACCAAGTTTTTGGTGATGTGTTAGCCTTTGATGCTACTTATCGCAAGAACAAGTACATGTGTCCTGTAGTGATCTTCTCTGGTGTTAATAACCATAATCAGACCATTGTATTTGCAAGTGTTATTGTATCTGATGAGACAGAACAAACATATTTTTGGTTGCTGGAACAACTTGCACAAGTAATGAAAAGTAAGACACCATCATCAGTAATAACCGACGGTGATTTGGCAATGAGGAACACAATAAGGAAAGTGTTTCCGAATGCGCAGCACAAGTTATGTGCTTGGCATTTGCTTCGCAATGCAACAAGCAATGTTGGAATTCCTGATTTCATGGCTTATTTCAAGAGGTGTATGTTGAGTGATTGGGATGTGGCTGAATTTGAGCAAAGGTGGAACAACATGCTTTCCATGTTCGGTTTGGAAGACAATACATGGCTTAGGGAAATGTATGAGAAGAAAAATATGTGGGCTACAACTTATATCCGAGGGCAATTTTTTGCTGGTATAAGGACTACATCTCGTTGTAAAGCTTTGTATTGTCACTTAGGCAAGTTTATACACTCGAGGATTAATTTGACCGAGTTTATGCAACAGTTTCATCGATTCCTAACCTACTTTCGTTTCAGAGAAGTGGAAGTTGACTTTAGATCTGTGCATGGTGAGCCAGTGTTGCAAACAAATTTTCATACCCTTGAGAGGTCAGCTTGA 1596 0.3872 MSMFEENETSMGLDDITSQQGDDYDGSRGPYDDAIGFDEGEEFLSEESVQDDCFEDVIMIDHFNDIKKIDMKNTSEDDLRKYDFADLDVAHEFYRWYGRSNGFSIRKNNVVLNSKSDILQQTFICSAQGHRRARRSTRSSKKRQLKPLTRFDCKAMFCVHINVNSGRWYVTIFDDSHNHRLLEEQHCGMLPTYRNKTKSDIMQINNFREVGIRPPHIYGSFARQSGGYQKIGFLKKDIYNEIGRQRQQQASDASGALEYLRQLRLKDNLMFYKHITDEDERLRHLFWCDGESQMNYQVFGDVLAFDATYRKNKYMCPVVIFSGVNNHNQTIVFASVIVSDETEQTYFWLLEQLAQVMKSKTPSSVITDGDLAMRNTIRKVFPNAQHKLCAWHLLRNATSNVGIPDFMAYFKRCMLSDWDVAEFEQRWNNMLSMFGLEDNTWLREMYEKKNMWATTYIRGQFFAGIRTTSRCKALYCHLGKFIHSRINLTEFMQQFHRFLTYFRFREVEVDFRSVHGEPVLQTNFHTLERSA. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11470 531 Pfam FAR1 DNA-binding domain 92 182 IPR004330 -
Seca3g11470 531 PANTHER OS01G0519700 PROTEIN 83 515 - -
Seca3g11470 531 MobiDBLite consensus disorder prediction 1 28 - -
Seca3g11470 531 Pfam MULE transposase domain 302 396 IPR018289 -
Seca3g11470 531 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11470 Seca-Chr3 262818446 262820854 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g11470 MULE 1.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11470 - - tpra:123884554 595.504