Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11460 ATGAATTGGGTTGAGTTACTTTTCTGGATTGCATTGACTGCAGTATTGATTTTTTCTGTGGTCCTTGATTGTCTTGTCATTTCCTATGAAGATGAAGTTAAATGGATAAAGAGAAAATTGGAGTTACTAGAAGCTCTGACAAAGGATTATGATCAACTTGTGAAGAAACGGGACGAAGTAGAATCAGGAGTCCGTCGTCTCTGGGAATTAGAAGACCTATCTGGTGGAATTCATCTGCAGCTAAGTGGAGCTGAGAATGAATGGGTAAAATCAACAGAAGAAGTGGTTAGTAAAGCAAAACGTTGTGTTGCCAGGTACAAAAGACATTCCCACGGACCGTTTCTTGGTCCTCTTACAGCTACCTTTAGAGCGATGCCCATTATATCTGTTATCTGTGAAATAAAATCTGTCAAAAGGGAGATGAGAGATCATTTACAAAAGAAAGATGAAAAAGCCAAGGAAATTTCAAAATCCATGGAGAATTCAAGATCTCTGCTGGATCAATATAAATATATAATTGAAGAGGCCGATAAATCTGTAGCAGCTCAAAACCAAAAGCAGAAGCAGCCTTCTACAAGATTTGAAGAACTGATGAAGAAGAGTGAACACATATTTTCCACAATGGAAGAGAGAAGGTCTATATATCTACTGCTTCCACTGCATGCTTTCGTGAAGGATTTGAGTCAGCTTCACTTAGAAACTGAAACAGAAAAGCTCTGGAAAAAAGAAGCGGAAGAAGTAATTGAAGATGCAGAGACCCTTATTAACAACTACTTGTGGTGGTTTGACTGGTTTCCAATTTTTAGCATATTGAAGAAATTCAAGATGCCTATTCCCATTGTTACGCATCAATTCAGAAAGGGAATGAGGAACATTGTCACTGAGTTTGATGGCCTGCTTAAGAGGAAGGAGAAGTATAATTTAGCTTTTATTGATAGAGCTGCAGAAAAGTCAATCTTCCCATCTATTATAGATGACAAAGAAATCACATCAGCCATTAAAAGCATCCACAGCAAGCTGAACAATCTGCAGAAAAGCTCAAAGCATGAACCTGAAATGAACCCGGTCTGTCATGCATTGGAAGAAATGTATAAGCAGTTTCAGAAAGCAGAAGAAACAGCTGGGAGAAATGCTTGTGTAGAGCAACTAAAGTCCATTGCTAAGGAGGTGGACAATTTACTAGAAAGGTACATGAATGAACCTGAGCTCAAACGTCAAGAGATCAAAAATGCTACTGATCTTCTTCAGAAAATAATAAGAATTTGCAGCATCAAAAGACAGAAATCAACCAAAGTAGTTGGTTTGAAAAATGAAGTACGAGATTTGGTCTCGAAGCTGACAACAAGCAGTGACAATCCTTCGACACTTTCCATTGTGGGGATGAAAGGTGTGGGGAAGACAACTCTGGCAAAGGCAGTTTATTACAACAAAGCTGTTGTCGAGCACTTCCGTATCCGTGTCTGGGTGACAGTAACTGAGGGAGCTGTCTACAAAGCAAAAGTTCTGCTGATGGACAAGCATGGGACTAAAAACCAGACATTGTATGTCACTCAGGTAAAAGAACACTTGAAAGAGAAGTTATGCCTTGTTGTTCTAGATAATGTCTCCAAAACAGAAGATTTTGACAAACTAGATGAAACATTATCTGGATCTGGATGGACAAATGGGAGCAGAATAGTGCTGACAACACGCTTTAAGAATGTGGCTTCGCATGCTGACAGTAGTAGCACCCCTCATCACATTCACATTCGACTACTAACGATGGAAGAGAGTTGGGCGTTGTTTGTGAAGGTGGCTGGCTTTGAAAAGAAAAAATTAGATCAAAAAGTGGAAAAATTTGCAAGAAAGGTAGTGGGAAGATGTGGGGGGTTACCACATGAAATCTTATCTCTTGGGTGTGTCATGTCAGCGAAGGATATAACTCAAGAGAACCTATCGTGGGTGCTTCGTCGAATCAATCATGGCCGTCACAGAGAACATTGGCTGCAGGCTTGGGAAAAGAACAGACAAGAACTGATAAGAGGAACTCTGATTAACTGTCTCTATTACTTCACACACTTCCCTGTAGACTTTGAAATCCCAGCGAGGAGATTAATCAATCTATGGGTTGCAGAAGGTTTGGTACAACAAAACAACCAACAAACGCCTGAAGACGCTGCAGAAAGGTGTTTGGAAGATTTGAGAGACCGCAACATGATTCAAGTAGTGGCACTAAAGTCCAATGCGAAGATTAAGACATGTCGTTTACCAAGCATGCTCAGAGAAATCATCTTGCAAGATAACGACGGAACAAGCCACAGCCAGCACTTGGGGACACATTTAGAGCGGCGATTTGCCTATCATTTTGATTATCATGGTCTTGATGCAAATTCAACACAAGTATTAAGCAAAAAAGGAATCCCCATATCAGTGTTTTTCTTTGACAAGCGAGAGGGAAGTAAACCAGGAGAACAAGTAGGGAAGATCCTTTCAACAGGCATTGTAAGTGAGCAGTTCCTGGAGATCAAAGTTCTTGATCTTGAACGCGTATTCAGACCTCAGCTGCCTGAGTCTTTAGTTAAGTTAACTAATATCAAGTATCTTAGCTTAAGGTGGACTTACTTGGAGGAATTCCCCCTGTGCATATGCAAACTTATGGAGCTGGAAACACTGGATTTAAAGCATACATGTATCCGTGTCATCCCTAGCTCCATCTGGAAATTGAAGAGGCTGAAGAACTTATATCTGAGCCAAAAATATCGAAGTAGACTTGAGGGCAAGCCAAGTGGAAAGTTTGAAGAAAATCTCCAGACGTTATGGGGTGTGTTCTTGTATGGGAGTTACCCTCTTCTTCGTTACCTCGACAAGCTGAAGAACCTTCAAAAATTAAAATTAGCTTTCCAGTTGACAGAATTAGAGCAAGACACAGTTGCCTCCAAGATTGTGCAGCTGAAACAGCTTAATTCACTGAGACTTAGATCAATAGATGAAGATGGTGAACGTAAAATCCTAAAATTGAATAATATGTCAAAGCTGGAGAAGCTCTCATCCCTTCAGTTGTTTGGGTTGTTAGAGGATAAACTACGCATGAGCCGCCTCCCACAAAATCTCATTGATCTCACCTTGTCAGCTTCAAAACTGTCAGATGATCCCATGACAGAGTTGCAGAACCTGCCCGAGCTAAAGTCCTTGTGTCTATATGCTGACTCTTATACAGGGATAAAGATGGTTTGTGCCTCAGGAAGCTTTCGAAAACTTCAAGTGCTGAGATTCTGGAAGTTATGGAACCTGCAAGAATGGGATGTGAAGGATGGAGCGATGCCTAGCCTCGTCGAGTTTGAAGCCCGGTTCTGCGAAAATTTGGACTATCCCACTGGGTTGAAGCATTTGAAAACTCTTCGCATGGTAAAGTTACACAAAATGTCAGATCAATTCATCAGGGATATCAAGACGTTATTGAATGACGTTGAGATTGATTCTAAAGATCATCAAGGGACACTCACTTCGGAGGAAAGCTTTTAA 3501 0.4073 MNWVELLFWIALTAVLIFSVVLDCLVISYEDEVKWIKRKLELLEALTKDYDQLVKKRDEVESGVRRLWELEDLSGGIHLQLSGAENEWVKSTEEVVSKAKRCVARYKRHSHGPFLGPLTATFRAMPIISVICEIKSVKREMRDHLQKKDEKAKEISKSMENSRSLLDQYKYIIEEADKSVAAQNQKQKQPSTRFEELMKKSEHIFSTMEERRSIYLLLPLHAFVKDLSQLHLETETEKLWKKEAEEVIEDAETLINNYLWWFDWFPIFSILKKFKMPIPIVTHQFRKGMRNIVTEFDGLLKRKEKYNLAFIDRAAEKSIFPSIIDDKEITSAIKSIHSKLNNLQKSSKHEPEMNPVCHALEEMYKQFQKAEETAGRNACVEQLKSIAKEVDNLLERYMNEPELKRQEIKNATDLLQKIIRICSIKRQKSTKVVGLKNEVRDLVSKLTTSSDNPSTLSIVGMKGVGKTTLAKAVYYNKAVVEHFRIRVWVTVTEGAVYKAKVLLMDKHGTKNQTLYVTQVKEHLKEKLCLVVLDNVSKTEDFDKLDETLSGSGWTNGSRIVLTTRFKNVASHADSSSTPHHIHIRLLTMEESWALFVKVAGFEKKKLDQKVEKFARKVVGRCGGLPHEILSLGCVMSAKDITQENLSWVLRRINHGRHREHWLQAWEKNRQELIRGTLINCLYYFTHFPVDFEIPARRLINLWVAEGLVQQNNQQTPEDAAERCLEDLRDRNMIQVVALKSNAKIKTCRLPSMLREIILQDNDGTSHSQHLGTHLERRFAYHFDYHGLDANSTQVLSKKGIPISVFFFDKREGSKPGEQVGKILSTGIVSEQFLEIKVLDLERVFRPQLPESLVKLTNIKYLSLRWTYLEEFPLCICKLMELETLDLKHTCIRVIPSSIWKLKRLKNLYLSQKYRSRLEGKPSGKFEENLQTLWGVFLYGSYPLLRYLDKLKNLQKLKLAFQLTELEQDTVASKIVQLKQLNSLRLRSIDEDGERKILKLNNMSKLEKLSSLQLFGLLEDKLRMSRLPQNLIDLTLSASKLSDDPMTELQNLPELKSLCLYADSYTGIKMVCASGSFRKLQVLRFWKLWNLQEWDVKDGAMPSLVEFEARFCENLDYPTGLKHLKTLRMVKLHKMSDQFIRDIKTLLNDVEIDSKDHQGTLTSEESF. 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11460 1166 PRINTS Disease resistance protein signature 522 536 - -
Seca3g11460 1166 PRINTS Disease resistance protein signature 621 635 - -
Seca3g11460 1166 PRINTS Disease resistance protein signature 876 892 - -
Seca3g11460 1166 PRINTS Disease resistance protein signature 455 470 - -
Seca3g11460 1166 Coils Coil 36 63 - -
Seca3g11460 1166 Gene3D Ribonuclease Inhibitor 811 943 IPR032675 -
Seca3g11460 1166 Gene3D - 410 581 IPR027417 -
Seca3g11460 1166 Pfam NB-ARC domain 437 653 IPR002182 GO:0043531
Seca3g11460 1166 Gene3D - 585 671 IPR042197 -
Seca3g11460 1166 SUPERFAMILY L domain-like 831 1147 - -
Seca3g11460 1166 Coils Coil 134 154 - -
Seca3g11460 1166 Gene3D - 672 761 IPR036388 -
Seca3g11460 1166 PANTHER DISEASE RESISTANCE PROTEIN RP 235 1095 IPR044974 GO:0006952
Seca3g11460 1166 SMART AAA_5 452 587 IPR003593 GO:0016887
Seca3g11460 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 655 IPR027417 -
Seca3g11460 1166 Gene3D Ribonuclease Inhibitor 944 1150 IPR032675 -
Seca3g11460 1166 Coils Coil 380 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11460 Seca-Chr3 262703785 262707285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11460 409 568 WRKY Transcription Factor Family AT4G12020 26.136 3.40e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11460 - - tpra:123886737 1454.11