Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11458 ATGACCATGGAACCAAACCCAACATCAGATCACATTCTAGACTGGCTTGAAGGTTCTGTCTCTTTCTTTCCATCATTCTTGGATGATCCATATAATAACTCTGCTTACATCCAAGAGTATCAGTTGTGGGATCAGGGCCAAGACATAAGTAGCCAGTACCAAACTGATGCCAATACATGTTCTCCTAATGCCACCAACAGCACCACCACCATTGTTGTTGCTGCTAGTACCACCAGCACAACATCCCTTGAGCCTTATGGTTCCATCAACCTACCACTTTCTGATTTGCCCAAGAAACGAAATGCCACTGATGAATCAAGTCTCAAACCATCACAAAGCCACAAGCACAAGAGAATCAAGAGCCGTCCAATGAATGAAGCTGACAATGGAGATGCAGCTGTTGAAGGGACAGTGGTTAGAAAATCTGGTGGGAACAAGAAAGGTGCAGCTAAGGCCAATGGAAATAACTGTAACAGTGGAAACAACAAGGAAGGTAGGTGGGCTGAGCAGTTGCTTAACCCTTGTGCTGCAGCCATAGCTGGTGGAAACTTGAATCGTGTGCAACATCTCTTATATGTTCTCCATGAGCTAGCCTCGCCTACTGGTGATGCTAACCACAGGCTTGCAGCCTATGGTCTCCGAGCACTGACAAACCATCTATCATCTTCTTCATCAGCTACCTCTTCAGGGTCTATAACTTTTGCATCTACAGAACCAAGGTTCTTTCAAAGGTCACTATTGAAGTTCTATGAGGTTAGCCCCTGGTTTTCATTTCCTAATAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGCTGAAGAACCAAATAGTTCACGTACCCTTCACATCCTTGACATTGGGGTCTCTCATGGTGTGCAATGGCCAACTTTTCTAGAAGCCTTGAGTCGTCGACCTGGTGGACCTCCTCCTCTAGTTCGCCTCACTGTGGTTCCTGCTTCCTCCTCCACTGAAAATGGCCAAAACATGGAGACCCCATTTTCAATAGGTCCACCTGGTGATAACTTCTCTTCTAGACTCCTTGGTTTTGCTCAGTCCATGAACGTCAATTTGCAGATAAACAGGCTCGATAATCAGCCACTGCAGACATTAAATGCTGAAATTATTGACACCTCCCCAGATGAAACTTTAATTGTCTGTGCACAGTTTAGGCTGCACCACTTGAATCATAACACTCCTGATGAAAGAAGTGAGTTTCTGAAGGTGTTAAGAAACATGGAGCCAAAAGGGGTGATATTAAATGAGAACAACATGGAATGTTGCTGCAGTAGTTGTGGGAATTTCGCTACTGGGTTCTCTCGAAGAGTGGAGTATTTGTGGAGGTTTTTGGATTCAACCAGCTCAGCATTCAAGGGTCGTGAGAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCTGCAAAAGCATTGACAAACCAGCGTGAGATGAATGAAGGGAGAGAAAAATGGTGTGGAAGAATGAAAGAAGCAGGGTTTGTAGGGGAAATATTTGGAGAGGATGCCATTGATGGAGCACGAGCTTTGTTAAGGAAGTATGATAGTAATTGGGAGATGAAAGTAGAAGAGAATAGCACGAGTGTGGGACTATGGTGGAAGGGGCAGCCTGTTTCTTTCTGTTCTTTGTGGAAGCTGGATGGAAATGGCCCTTGCCTTGAGTGA 1674 0.4486 MTMEPNPTSDHILDWLEGSVSFFPSFLDDPYNNSAYIQEYQLWDQGQDISSQYQTDANTCSPNATNSTTTIVVAASTTSTTSLEPYGSINLPLSDLPKKRNATDESSLKPSQSHKHKRIKSRPMNEADNGDAAVEGTVVRKSGGNKKGAAKANGNNCNSGNNKEGRWAEQLLNPCAAAIAGGNLNRVQHLLYVLHELASPTGDANHRLAAYGLRALTNHLSSSSSATSSGSITFASTEPRFFQRSLLKFYEVSPWFSFPNNIANASILQVLAEEPNSSRTLHILDIGVSHGVQWPTFLEALSRRPGGPPPLVRLTVVPASSSTENGQNMETPFSIGPPGDNFSSRLLGFAQSMNVNLQINRLDNQPLQTLNAEIIDTSPDETLIVCAQFRLHHLNHNTPDERSEFLKVLRNMEPKGVILNENNMECCCSSCGNFATGFSRRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNQREMNEGREKWCGRMKEAGFVGEIFGEDAIDGARALLRKYDSNWEMKVEENSTSVGLWWKGQPVSFCSLWKLDGNGPCLE. 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11458 557 ProSiteProfiles GRAS family profile. 159 548 IPR005202 -
Seca3g11458 557 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 142 536 IPR005202 -
Seca3g11458 557 Pfam GRAS domain family 169 548 IPR005202 -
Seca3g11458 557 MobiDBLite consensus disorder prediction 98 112 - -
Seca3g11458 557 MobiDBLite consensus disorder prediction 83 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11458 Seca-Chr3 262693684 262695357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11458 2 548 GRAS Transcription Factor Family AT3G13840 50.906 1.31e-178 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g11458 GRAS 1.2e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11458 - - mtr:11434050 886.33