Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11455 ATGGATGGAGCTATTGAGATAAATCAAGGCAACAACATTTTGTCTTTAGAGTTACAGCAGGCACTTGAAGCCCCATTTGATTTAAATGAAGCCCCATTTGATTTAAATGAGTTGCCATTAGAAGAAGAAAATCTTTCTAATGGTTTGGATACAATATTTGAACCATTAGAAGAGGAAAATCCTTCCAATGCTTCGAATATAATATTTGAACCATTTGTTGGTCAATGTTTCTCAAACGAGGAAAAAGCTTTGGAATTTTATCAGAGATATGCTAAGCAACATGGATTTTCAGTTCTAAAGGCTCGCTTTGATAAAAACAAAAATGGAGAAGTTAGAAGGCGTGATTTCTTTTGTCATCGCGCAGGAAGGCAACCACTCAAAATTGTTTACCCATCAAAGGATCAACGACATCGATCATCGGCACGCTCTGACTTCAAGGCTCATATGCGTATTAAACTTAAAAAATATGTTGATATATTCCCTGATGAATGGCATGTTGTTGAGTTTATTGCCGAACATAACCATGAGTTGCTTTCTGAAGAAGAGGAGCGCTTTCTACGATCTCACCGCACCATTACTAAAGAAGATGAAAATCGTATACTTTTGTTGAAAGATGCGGGTCTTTGTGTGCCACAAATTATGCGTGTGATGGAGTTAGAAAAAAATGTGAAACATGGATATCTTTCTTTTATCCCAAAGGATGTTTACAATCTGTTTACTAAGATCCATAACATTGAAGGGAAGAATGGTGTTACTGATTTGTTGTGCTACTGTCAAGCGGCAAAGGCAGAGAATTGTAACTTTCAATACTCTTATACATTTGATGCAGAAAGAAAATTAGAGCACATTTTTTGGTCACCGGCTCATTGTTTTGATTGGTACCAAAAATTTGGAGATGTCGTTGCCTTTGATACCACATACAAGATCAATGCATATGATATGCCCTTTGGCATTTTTGTTGGGATTGACAATCAAGGAAGGACTATTTTATTTGGATGCGCTCTTCTTCGTAATGAGACTACCAATGCCTTTTCATGGTTAATGAAGACTTTTGTCTCCTTAATGAAGAAGCCACCTAAGACAATTTTGACTGATCAAGATCCATGGATGACAAGAGCTATTTCACTAGAAATGCCTTTGACTAAGCATGCATTTTGTATATGGCACATCACCTCCAAGTTTAGTGGTTGGTTCACTGCACTTCTTCGTAACCAATATCTGCAATGGTGTGTTAGCTTTTATCAATTATATAAGCTTGACACTCAAGAAGAGTTTGAAAATCAATGGCCTAAAGTGATTGAAAAGTTTAACATGCAAAATAATAAGCATGTGTTAGGCCTTTATGGAATAAGGCACTATTGGGTTCCCGCGTATCTTCGTGATTACTTTTTTGCAGGAATAACAACAACAGGGAGATATGAAAGTATCAATTCTTTTGTGAAACGGTTTACAAGTTCTCATGTTTGCTTGAGTCGATTCATTAAACAAGTTGATCTAGCCATTGAAGATATTGAACATAAGCAATTGCATGCGACCATGTTGGATAAATATAGGGGATCTTCACTACGAACTCTATCTCCATTGGAACATCAAGCTCAAGATATCTTGACTCCTTTTGCATTCAAAAAGTTTCAAGAAGAATTCAGTAGAGCTACTCAATATTTTGTGTTTCTTGATGGAACTACTGATTTTATGGTGCAATATTACAAGGAAGGTGAGACTCAAAAGCATAAAGTTCATTGGGATAAACAAGTAGCAACTTGTTCATGTAAGCATTTCGAATTTTAG 1788 0.3624 MDGAIEINQGNNILSLELQQALEAPFDLNEAPFDLNELPLEEENLSNGLDTIFEPLEEENPSNASNIIFEPFVGQCFSNEEKALEFYQRYAKQHGFSVLKARFDKNKNGEVRRRDFFCHRAGRQPLKIVYPSKDQRHRSSARSDFKAHMRIKLKKYVDIFPDEWHVVEFIAEHNHELLSEEEERFLRSHRTITKEDENRILLLKDAGLCVPQIMRVMELEKNVKHGYLSFIPKDVYNLFTKIHNIEGKNGVTDLLCYCQAAKAENCNFQYSYTFDAERKLEHIFWSPAHCFDWYQKFGDVVAFDTTYKINAYDMPFGIFVGIDNQGRTILFGCALLRNETTNAFSWLMKTFVSLMKKPPKTILTDQDPWMTRAISLEMPLTKHAFCIWHITSKFSGWFTALLRNQYLQWCVSFYQLYKLDTQEEFENQWPKVIEKFNMQNNKHVLGLYGIRHYWVPAYLRDYFFAGITTTGRYESINSFVKRFTSSHVCLSRFIKQVDLAIEDIEHKQLHATMLDKYRGSSLRTLSPLEHQAQDILTPFAFKKFQEEFSRATQYFVFLDGTTDFMVQYYKEGETQKHKVHWDKQVATCSCKHFEF. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11455 595 Pfam MULE transposase domain 300 392 IPR018289 -
Seca3g11455 595 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 595 IPR031052 GO:0006355
Seca3g11455 595 Pfam FAR1 DNA-binding domain 85 178 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11455 Seca-Chr3 262667742 262670645 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g11455 FAR1 1.3e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11455 - - aew:130761261 718.383