Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11449 ATGCCTACAAAGAAGCTTCAATGGAGATCATTGGTACTAGGCTGTTTCAAGGCCAAGGACCTATCTTTGGAAACTCCGAACATAGTTCCCAAGAAGTCATCTTCAAGTAGAATCTCCATCTCTGATTTAAGTGATTATTCATCACTCTCTATCATGAGTGATTTGTCCAATTCTCTAGTGGGATCAAATCTTCAAATTTTCACTTACAAGGAGCTCAAAGAGGTTACACACAATTTCAGCAAATCCAACTTTCTTGGGGAAGGTGGGTTTGGAAAGGTATATAAAGGGTTCATTGATAACAAACTTAGGCCTACTCTGAGTCCTCGAGTTGTAGCAGTTAAGGCCTTAAATTTGGATGGAAAACAAGGCCACAGAGAGTGGTTGGCTGAAGTAATCATTCTGGGGCAGTTGAAGCATCGCCATCTTGTTAATTTAATTGGCTATTGCTGTGAAGATGAGAACAGACTTCTTGTGTATGAATACATGGAGAGGGGCAATCTTGAGGATAAGCTTTTCAATGGTTACTTAGCAACCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAGGGACTTGCTTTCCTTCATGAAGAAGAGAAACCAGTCATATATAGAGATATTAAAGCCTCAAACATTCTATTGGATGCTGATTACAATGCCAAGCTCTCAGATTTTGGTTTAGCAATAGATGGACCAGAAAAAGATCAAACACATGTTACAACTCGTGTGATGGGCACTCATGGTTATGCTGCTCCAGAGTATATCATGACAGGTATTTACTCAAAACAACCCCTTTAA 807 0.3978 MPTKKLQWRSLVLGCFKAKDLSLETPNIVPKKSSSSRISISDLSDYSSLSIMSDLSNSLVGSNLQIFTYKELKEVTHNFSKSNFLGEGGFGKVYKGFIDNKLRPTLSPRVVAVKALNLDGKQGHREWLAEVIILGQLKHRHLVNLIGYCCEDENRLLVYEYMERGNLEDKLFNGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDIKASNILLDADYNAKLSDFGLAIDGPEKDQTHVTTRVMGTHGYAAPEYIMTGIYSKQPL. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11449 268 PANTHER OS01G0588500 PROTEIN-RELATED 41 265 - -
Seca3g11449 268 FunFam Os07g0541700 protein 162 249 - -
Seca3g11449 268 Pfam Protein tyrosine and serine/threonine kinase 82 266 IPR001245 GO:0004672|GO:0006468
Seca3g11449 268 Gene3D Transferase(Phosphotransferase) domain 1 162 266 - -
Seca3g11449 268 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Seca3g11449 268 ProSitePatterns Protein kinases ATP-binding region signature. 85 114 IPR017441 GO:0005524
Seca3g11449 268 FunFam Serine/threonine-protein kinase BIK1 46 161 - -
Seca3g11449 268 SUPERFAMILY Protein kinase-like (PK-like) 54 265 IPR011009 -
Seca3g11449 268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca3g11449 268 SMART serkin_6 79 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11449 268 ProSiteProfiles Protein kinase domain profile. 79 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11449 Seca-Chr3 262606202 262608615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11449 65 261 Glycoside Hydrolase AT3G07070 54.500 2.94e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca3g11449 PK_Tyr_Ser-Thr 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11449 - - gmx:100790454 431.024