Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11430 ATGGCCGTAGCTCTGGCAATTCTCCATCCAACTCTCTTCTTCTTCATCTTCATCATCATCATCATTACCATCACTCTGCCTGTGATATGTTCCCTGTCAGAAGCTGAAGCTTTATTGGCTCTGAAGAACTCATTCTCCAATGCTGAGGCTCTTGAAAGTTGGGTGGCTGACTCTATTCCTTGCACAGAAGATGATCAATGGGAAGGCATTGTTTGCTACAATGGCATTGTCACAGGGCTTCGCCTTGGAGGAATGGGGCTACTAGGGAAAATTGATGTTGATGCATTGCTTGAGCTTAAGGGTCTTAGAACTATAAGCCTTGTCAACAATGCTTTCTCAGGTCCCATCCCAGAACTCAATAAAATTGGTTTCTTGAAAGCCATTTATTTGCAAGGAAACAAGTTTTCAGGGGATATTCCTCAGGAATATTTCCAAGGAATGAGGTCTTTGAAGAAACTTTGGCTATCTAATAACCAATTCACAGGGAAGATTCCATCATCATTGTCTCAGGTTCCTCAGCTTATGGAGTTGCATCTTGAAAACAACCAGTTTAGTGGAACCATTCCTAATCTTGAAAACCCTTCCTTGTTGAAGCTCAATCTGTCCAACAACAAATTGGAAGGTGAAGTCCCAACTAGTTTGTTGAAATTCCAAGAGAGCTCATTTGCAGGGAATTCTGGTCTTTGTGGTGACAAGTTTGGAAATTCATGTGAAAACCCAAAAGAGGACAAAAATTCCACTGAGGAACAGAATAATGGAGAGGCTAGCAACAATAAAGGTAATGCAGCACAGATTGCTGGCATTGTTGTGGCCAGTTTAGTGATTATCTCACTTATTGTCTTTTTACTTGTGAGATCAAAGAGAAAGAAGGATGAGGCTTTTGATGTGCTTGGACAAGATATAAATGAGGGTGCTGTTGAAGTTCAAGTAACTGCACCAGTGAAAAGGGAAGTGGATACACTGAGAAAAGTATCATCTAGCAGAAGGGGAGCTAACAAGGGGGTTGGAGAACTTGTGATGGTGAGTGATGAGAAGGGTGCTTTTGGGTTGCCAGATTTGATGAAGGCAGCTGCAGAGGTGCTAGGAAATGGAGGGTTTGGATCATCTTACAAAGCTGTGATGGCTAATGGTGTGGCAGTTGTGGTGAAAAGGACCAGAGATATGAATGGATTGGGAAAAGATGGTTTTGATGCAGAAATGAGGAGGCTTGGAAGGCTAAAACACTGGAATATATTGACCCCTTTAGCTTATCATTACAGAAAGGAAGAGAAACTAGTGATCTCTGAGTATGTTCCTAGAGGCAGTCTACTTTTTTTGCTACATGGTGATAGGGGACCATCACATGCTGAATTGAATTGGCCTGCTCGATTTAAGATTGTGCAAGGAATTGCTGAAGGGATGCGTTATCTTCACACAGAACTTGCAGCCTCTGATCTACCACATGGCAATCTCAAGTCAAGCAATGTTCTCCTTGGACCAGACTATGAAGCAATGCTTGTAGATTATGGGTTTGTCCATTTGGTTAATCCTTCCACTGTTACAAATGCACTAATTGCTTATAAGGCTCCTGAAGCATTACAACATGGCAAAGTTTCACGTAGTTGTGATGTTTATTGTCTTGGGATTGTCATACTTGAGATACTCACTGGAAAATTTCCTTCTCAATATCTTAGCAATGGTAAAGGTGGGACTGATGTAGTTCAATGGGTTGCATCAGCAATTTCTGAGGGTAGGGAATCAGAACTACTTGATCCTGAAATTGCAAGCTCTAAGAGTTCACTGGTTGAAATGGAACAACTCTTACATATTGGTGCTGCTTGCACTGAAAGTAACCCTCAGAGGAGATTAGACATGATGGAAGCTGTTAGGAGGATAGAGGAGATAAAAACCAAAGGTGTTGGTCAAGAATCAAGAACAATAGAGGTGTTGCCATCTCTCAGAGATGGTTATGCAGAATCTCATGTGTTTGATGACCAATCACGGAGGAGACATGCAACAAACAGCTTTGGAAGCAGGGATAAACTTGAATTTGGCATCTCCTAA 2043 0.4175 MAVALAILHPTLFFFIFIIIIITITLPVICSLSEAEALLALKNSFSNAEALESWVADSIPCTEDDQWEGIVCYNGIVTGLRLGGMGLLGKIDVDALLELKGLRTISLVNNAFSGPIPELNKIGFLKAIYLQGNKFSGDIPQEYFQGMRSLKKLWLSNNQFTGKIPSSLSQVPQLMELHLENNQFSGTIPNLENPSLLKLNLSNNKLEGEVPTSLLKFQESSFAGNSGLCGDKFGNSCENPKEDKNSTEEQNNGEASNNKGNAAQIAGIVVASLVIISLIVFLLVRSKRKKDEAFDVLGQDINEGAVEVQVTAPVKREVDTLRKVSSSRRGANKGVGELVMVSDEKGAFGLPDLMKAAAEVLGNGGFGSSYKAVMANGVAVVVKRTRDMNGLGKDGFDAEMRRLGRLKHWNILTPLAYHYRKEEKLVISEYVPRGSLLFLLHGDRGPSHAELNWPARFKIVQGIAEGMRYLHTELAASDLPHGNLKSSNVLLGPDYEAMLVDYGFVHLVNPSTVTNALIAYKAPEALQHGKVSRSCDVYCLGIVILEILTGKFPSQYLSNGKGGTDVVQWVASAISEGRESELLDPEIASSKSSLVEMEQLLHIGAACTESNPQRRLDMMEAVRRIEEIKTKGVGQESRTIEVLPSLRDGYAESHVFDDQSRRRHATNSFGSRDKLEFGIS. 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11430 680 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Seca3g11430 680 Pfam Protein kinase domain 359 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11430 680 Gene3D Ribonuclease Inhibitor 193 240 IPR032675 -
Seca3g11430 680 Gene3D Transferase(Phosphotransferase) domain 1 431 643 - -
Seca3g11430 680 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Seca3g11430 680 FunFam Nuclear pore complex protein NUP107 31 190 - -
Seca3g11430 680 ProSiteProfiles Protein kinase domain profile. 355 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11430 680 SUPERFAMILY L domain-like 30 217 - -
Seca3g11430 680 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 631 IPR046959 -
Seca3g11430 680 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Seca3g11430 680 SUPERFAMILY Protein kinase-like (PK-like) 359 625 IPR011009 -
Seca3g11430 680 Gene3D Phosphorylase Kinase; domain 1 324 430 - -
Seca3g11430 680 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11430 Seca-Chr3 262371651 262374485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11430 12 628 Receptor kinase-like Gene Family AT3G42880 47.188 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca3g11430 Pkinase 3.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11430 - - tpra:123886727 882.093