Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11428 ATGGTCTCACACCTCCTCCTCAGACCAAAGCAGATTCAAGGAACATGCTTACAAAACTCCCAAGCTTTCCCACTTTCTCTTATTTCACCCTCCCAAACTACCAACCATGAACTAACTCAACAGGATCACCATCAGATTTTTATTTTTTTCCCCATAAGCAATCACTTAATTCCACATACTTTTCTTGGTGGGGTTCTCTTAAAAATGTCATCTTTCCCTAATTCGGTCTCCGATGGCCGGAAGTCCGGCAAGGCACCGGAGAAGTCCAATTTCTCACAAACTTGCAGCCTCCTCAGCCAGTTCTTGAAGGAGAAGCGCATCTCTGGAGATTCTACCCCCGGAATTGGTGCCAAAATGGACCCTAGAGCAAGCACGAAAGATTTGTTAGCCAATCTACAAAAACCAGATGGGACTTTGAGACTACACGCTTCTGCTATGGATTCCCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATGATAGGTCATCAGGGTCTGAAACTCCCCAAATGACAATATTCTATGCCGGAAAAATGTTAGTATTTGATGGCTTTCCACCAGAGAAGGCAACAGAGGTAATGGAATTAGCCACCAAGTTAGCCTCTGATACTTCTAGCCCTGAAGAAAAAAACCCCCCAAGTGCTCCAGTCACTACTGAAAAATTGAACGAATCCAAAGCACCACAACCAAACACTGCCTCTGCCTCAGAAACCCCTCGACCAGCTGTTGGTTCAGGTATAAGAACAGAGAAAACTAAATAG 768 0.4479 MVSHLLLRPKQIQGTCLQNSQAFPLSLISPSQTTNHELTQQDHHQIFIFFPISNHLIPHTFLGGVLLKMSSFPNSVSDGRKSGKAPEKSNFSQTCSLLSQFLKEKRISGDSTPGIGAKMDPRASTKDLLANLQKPDGTLRLHASAMDSLPQLVENPCIKKSNDRSSGSETPQMTIFYAGKMLVFDGFPPEKATEVMELATKLASDTSSPEEKNPPSAPVTTEKLNESKAPQPNTASASETPRPAVGSGIRTEKTK. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11428 255 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 81 236 IPR040390 -
Seca3g11428 255 MobiDBLite consensus disorder prediction 200 241 - -
Seca3g11428 255 SMART tify_2 166 201 IPR010399 -
Seca3g11428 255 MobiDBLite consensus disorder prediction 199 255 - -
Seca3g11428 255 ProSiteProfiles Tify domain profile. 166 201 IPR010399 -
Seca3g11428 255 Pfam tify domain 169 199 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11428 Seca-Chr3 262346366 262348517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11428 82 226 Tify Gene Family AT1G72450 31.515 7.51e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca3g11428 tify 8.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11428 K13464 - gmx:100778559 248.825