Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11426 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAGCAAGCTCTGATGCAACAAGCTCTTCTTCAACAACAGTCTCTCTATCACCCCGGTCTCCTAGCTCCTCCTCCGCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAACTTCTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCAGGTACTGGCCTGGTTGAAAGTGTTAAACTTTTTAGAAAGGAGAAGTCATCCTATGGATTCATTCATTATTTTGATCGGAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGATCTCAGTCCTGAGGTTACTGATGCTACGTTGTTCGCATGCTTTTCTGTCTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACCGGGCGTTCAAGGGGATTTGGATTTGTCTCATTCCGTAATCAACAGGATGCTCAAAGCGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTGGCAATGAAGAGAAGCAAAACTCAGACACCAAAAGTGTTGTGGAACTGACAAATGGTTCATCTGAAGATGGAAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAATATACTACTGTTTATGTGGGTAACCTTGGTTCAGAGGTAACACAGCTTGATCTCCATCGCCACTTCCATTCTCTTGGAGCTGGAGTAATAGAGGAGGTTCGTGTTCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATTCCCAGTCGATTCTCTGTGGCAAACAAATTAAGTGCTCGTGGGGGAGCAAGCCCACACCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGTATCTCTGCCAGGCCTCTCTACCGATCTTTTGGCCTATGAGAGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATACCTTGATGCATCCTCAAGGCCAACATCCCCTTAAACAGGCAGCAATTGGAGCAAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTATCAGTAA 1257 0.4638 MQNHRLKQQQQQALMQQALLQQQSLYHPGLLAPPPQIEPIPSGNLPPGFDPTSCRSVYVGNIHTQVTEPLLQEVFAGTGLVESVKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLGSEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNSQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAVSLPGLSTDLLAYERQLAMSKMGGVHTLMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11426 418 SMART rrm1_1 262 332 IPR000504 GO:0003723
Seca3g11426 418 SMART rrm1_1 141 214 IPR000504 GO:0003723
Seca3g11426 418 SMART rrm1_1 56 125 IPR000504 GO:0003723
Seca3g11426 418 FunFam Oligouridylate-binding protein 1C 238 340 - -
Seca3g11426 418 MobiDBLite consensus disorder prediction 221 261 - -
Seca3g11426 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Seca3g11426 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 329 IPR000504 GO:0003723
Seca3g11426 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Seca3g11426 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 336 IPR000504 GO:0003723
Seca3g11426 418 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Seca3g11426 418 FunFam oligouridylate-binding protein 1B-like isoform X2 1 137 - -
Seca3g11426 418 Gene3D - 238 340 IPR012677 -
Seca3g11426 418 CDD RRM2_PUB1 139 218 - -
Seca3g11426 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 339 - -
Seca3g11426 418 FunFam oligouridylate-binding protein 1-like isoform X2 138 233 - -
Seca3g11426 418 SUPERFAMILY RNA-binding domain, RBD 251 343 IPR035979 GO:0003676
Seca3g11426 418 SUPERFAMILY RNA-binding domain, RBD 134 224 IPR035979 GO:0003676
Seca3g11426 418 MobiDBLite consensus disorder prediction 218 261 - -
Seca3g11426 418 Gene3D - 1 136 IPR012677 -
Seca3g11426 418 Gene3D - 137 234 IPR012677 -
Seca3g11426 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Seca3g11426 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11426 Seca-Chr3 262319166 262323932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11426 50 337 Eukaryotic Initiation Factors Gene Family AT4G34110 28.383 5.20e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11426 K13201 - gmx:100781227 775.007